4ment/phylostan

Phylogenetic inference using Stan

Language: Python - Size: 13.3 MB - Last synced at: 4 days ago - Pushed at: 5 months ago - Stars: 23 - Forks: 5

4ment/cladokit

A minimal, no-frills C++17 library for phylogenetic trees

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4ment/treezy

Language: Python - Size: 43.9 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

4ment/torchtree-notebooks

Language: Jupyter Notebook - Size: 4.73 MB - Last synced at: 2 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

4ment/torchtree

A probabilistic framework in PyTorch for phylogenetic models

Language: Jupyter Notebook - Size: 42.6 MB - Last synced at: 5 days ago - Pushed at: 8 months ago - Stars: 16 - Forks: 3

4ment/skyplotr

Language: R - Size: 715 KB - Last synced at: 2 months ago - Pushed at: 5 months ago - Stars: 2 - Forks: 0

4ment/physher

A multi-algorithmic framework for phylogenetic inference

Language: C - Size: 2.47 MB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 14 - Forks: 2

4ment/torchtree-experiments

Language: R - Size: 163 KB - Last synced at: about 2 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

4ment/torchtree-physher

Language: Python - Size: 207 KB - Last synced at: 7 days ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

4ment/flc

Local clock model using relaxed and strict clocks

Language: Java - Size: 1.28 MB - Last synced at: about 2 months ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 3

4ment/CBAN Fork of CompEvol/CBAN

releases of beast2 packaged zip files in a reliable location

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4ment/logstat

Language: Python - Size: 27.3 KB - Last synced at: 2 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

4ment/beast-mcmc Fork of beast-dev/beast-mcmc

Bayesian Evolutionary Analysis Sampling Trees

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4ment/dodonaphy-experiments

Language: Python - Size: 79.1 KB - Last synced at: 12 days ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

4ment/bioconda-recipes Fork of bioconda/bioconda-recipes

Conda recipes for the bioconda channel.

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4ment/torchtree-scipy

Package providing extra functionalities from SciPy

Language: Python - Size: 21.5 KB - Last synced at: 1 day ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

4ment/torchtree-experimental

Language: Python - Size: 35.2 KB - Last synced at: 25 days ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

4ment/SWeBLAST

Sliding window web-based BLAST

Language: Python - Size: 6.84 KB - Last synced at: 2 months ago - Pushed at: over 7 years ago - Stars: 3 - Forks: 0

4ment/gradient-benchmark

automatic/analytical differentiation benchmark

Language: Python - Size: 84 KB - Last synced at: 4 months ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 2

4ment/hamiltorch Fork of AdamCobb/hamiltorch

PyTorch-based library for Riemannian Manifold Hamiltonian Monte Carlo (RMHMC) and inference in Bayesian neural networks

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4ment/beaglepy

hms cutie beagle pie

Language: C++ - Size: 78.1 KB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 1

4ment/seqotron

Alignment editor for Mac OS X

Language: Objective-C - Size: 656 KB - Last synced at: 4 months ago - Pushed at: almost 8 years ago - Stars: 28 - Forks: 4

4ment/bito Fork of phylovi/bito

Python-interface C++ library implementing subsplit Bayes networks for Bayesian phylogenetics

Language: C++ - Size: 1.99 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

4ment/phylojax

Language: Python - Size: 90.8 KB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

4ment/torchtree-bito

Language: Python - Size: 66.4 KB - Last synced at: 2 months ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0

4ment/torchtree-plugin-template

A GitHub template for developing a torchtree plugin

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4ment/torchtree-tensorflow

Language: Python - Size: 22.5 KB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

4ment/aiv-migratory-flyways

Language: Python - Size: 3.58 MB - Last synced at: 2 months ago - Pushed at: about 8 years ago - Stars: 2 - Forks: 0

4ment/tippartials

Language: Jupyter Notebook - Size: 38.1 KB - Last synced at: 2 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

4ment/docker-images Fork of ContinuumIO/docker-images

Repository of Docker images created by Continuum Analytics

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4ment/treetime_validation Fork of neherlab/treetime_validation

Size: 2.42 MB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

4ment/NUTS Fork of mfouesneau/NUTS

python version of the No-U-Turn Sampler (NUTS) from Hoffman & Gelman, 2011

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4ment/pytorch Fork of pytorch/pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

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4ment/marginal-experiments

19 dubious ways to compute the marginal likelihood of a phylogenetic tree topology

Language: Python - Size: 117 KB - Last synced at: 4 months ago - Pushed at: over 6 years ago - Stars: 4 - Forks: 2

4ment/pystan Fork of stan-dev/pystan2

PyStan, the Python interface to Stan

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4ment/laplus

Laplace approximation of the marginal likelihood

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4ment/reassortment-plot

R script to assess reassortment from posterior samples of trees using multidimensional scaling

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4ment/scripts

Language: Python - Size: 1.95 KB - Last synced at: 2 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

4ment/stan Fork of stan-dev/stan

Stan development repository. The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.

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4ment/beagle-lib Fork of beagle-dev/beagle-lib

general purpose library for evaluating the likelihood of sequence evolution on trees

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4ment/variational-talk

Size: 5.86 MB - Last synced at: 2 months ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

4ment/bwest

Modules for BEAST 2

Language: Java - Size: 35.2 KB - Last synced at: 2 months ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0

4ment/sbn Fork of zcrabbit/sbn

Generalizing Phylogenetic Posterior Estimator from MCMC samples via subplit Bayesian networks

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4ment/Clock-Tutorial

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4ment/model-selection Fork of BEAST2-Dev/model-selection

Automatically exported from code.google.com/p/model-selection

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4ment/lcfit Fork of matsengrp/lcfit

A specialized surrogate function for phylogenetic likelihoods.

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4ment/sts-test

Language: C++ - Size: 8.86 MB - Last synced at: 2 months ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0

4ment/dockerfiles

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4ment/tutorials

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4ment/libptpll Fork of matsengrp/libptpll

Language: C++ - Size: 131 KB - Last synced at: over 2 years ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0

4ment/flc-data

Language: Python - Size: 19.5 KB - Last synced at: 2 months ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

4ment/patristic

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4ment/gdp

Genetic Diversity tests using patristic distances

Language: C++ - Size: 26.4 KB - Last synced at: 2 months ago - Pushed at: almost 9 years ago - Stars: 0 - Forks: 0

4ment/smctc Fork of matsengrp/smctc

Our fork of Adam M. Johansen's Sequential Monte Carlo Template Class

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4ment/aiv-rate-heterogeneity

Avian influenza virus data sets

Size: 815 KB - Last synced at: 2 months ago - Pushed at: over 9 years ago - Stars: 0 - Forks: 0

4ment/phyml Fork of stephaneguindon/phyml

PhyML -- Phylogenetic estimation using (Maximum) Likelihood

Language: C - Size: 7.8 MB - Last synced at: over 2 years ago - Pushed at: almost 9 years ago - Stars: 0 - Forks: 0

4ment/bacter Fork of tgvaughan/bacter

Bacterial phylogenetics in BEAST 2.

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4ment/dndscan

Perl implemention of the DnDscan program

Language: Perl - Size: 164 KB - Last synced at: 2 months ago - Pushed at: about 10 years ago - Stars: 0 - Forks: 0