AlmaasLab/AutoKEGGRec

AutoKEGGRec is an automated tool that creates first draft metabolic network reconstructions of single organisms, community reconstructions based on a list of organisms, and finally a consolidated reconstruction for a list of organisms. All reconstructions are based on data from KEGG.

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AlmaasLab/csdR

Efficient CSD implementation in R

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AlmaasLab/BiGMeC

BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor

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AlmaasLab/autopacmen Fork of klamt-lab/autopacmen

Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method

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AlmaasLab/T66-GEM

GEM for Aurantiochytrium sp. T66

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AlmaasLab/BayesianGEM Fork of SysBioChalmers/BayesianGEM

This repository contains code and data needed to replicate the analysis carried out in the manuscript Pettersen J and Almaas A. 2023.

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AlmaasLab/acidFBA

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AlmaasLab/micInt

R package for analyzing microbial co-occurences

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AlmaasLab/SystemsBrewology

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AlmaasLab/CarveFungi Fork of SandraCastilloPriego/CarveFungi

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