Bader-Research/MST-ReplacementEdges

MST-ReplacementEdges: Find Minimum Spanning Tree Replacement Edges

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Bader-Research/triangle-counting

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Bader-Research/TriangleCentrality-in-GraphBLAS Fork of ak47mrj/TriangleCentrality-in-GraphBLAS

A GraphBLAS implementation of Paul Burkhardt's Triangle Centrality Algorithm

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Bader-Research/SWARM

SWARM: Software and Algorithms for Running on Multicore

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Bader-Research/stinger Fork of stingergraph/stinger

The STINGER in-memory graph store and dynamic graph analysis platform. Millions to billions of vertices and edges at thousands to millions of updates per second.

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Bader-Research/Spanning-Tree

Spanning-Tree: Parallel Spanning Tree

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Bader-Research/snap-graph

SNAP (Small-world Network Analysis and Partitioning) is an extensible parallel framework for exploratory analysis and partitioning of large-scale networks.

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Bader-Research/SIMPLE

SIMPLE is a framework for implementation of parallel algorithms using our methodology for developing high performance programs running on clusters of SMP nodes. Our methodology is based on a small kernel (SIMPLE) of collective communication primitives that make efficient use of the hybrid shared and message passing environment. We illustrate the power of our methodology by presenting experimental results for sorting integers, two-dimensional fast Fourier transforms (FFT), and constraint-satisfied searching.

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Bader-Research/Rake

Rake: Parallel Expression Evaluation using Tree Contraction

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Bader-Research/PSort

PSort: Parallel Sorting using Sampling with Randomized and Deterministic Approaches

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Bader-Research/PMedian

PMedian: Parallel Selection and Median Finding

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Bader-Research/pasqual

Pasqual: a Parallel de Novo Genome Sequence Assembler

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Bader-Research/ParJedi

ParJedi: Parallel Code for the State Assignment of large Finite State Machines

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Bader-Research/ListRanking

Parallel List Ranking for multicore processors

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Bader-Research/MST

MST: Parallel Minimum Spanning Forest

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Bader-Research/ImageU

ImageU: Parallel Combinatorial Algorithms

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Bader-Research/hornet Fork of hornet-gt/hornet

Hornet data structure for sparse dynamic graphs and matrices

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Bader-Research/GTgraph

GTgraph: A suite of synthetic random graph generators

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Bader-Research/gtfold Fork of gtfold/gtfold

GTfold is a fast, scalable multicore code for predicting RNA secondary structure and is one to two orders of magnitude faster than the de facto standard programs and achieves comparable accuracy of prediction.

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Bader-Research/GRAPPA

GRAPPA: Genome Rearrangements Analysis under Parsimony and other Phylogenetic Algorithms

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Bader-Research/GraphCT

GraphCT: a Graph Characterization Toolkit for the Cray XMT

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Bader-Research/ExactMP

ExactMP: An Efficient Parallel Exact Solver for Phylogenetic Tree Reconstruction Using Maximum Parsimony

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Bader-Research/DCJUC Fork of stplaydog/DCJUC

Maximum Parsimonious Tree Construction

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Bader-Research/DARPA-SSCA2

DARPA UHPC Graph Theory Benchmark (Scalable Synthetic Compact Application #2)

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Bader-Research/Cycle-Detection

Cycle-Detection: A Parallel Algorithm for Cycle Detection in Planar Partitioned Digraphs

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Bader-Research/cuStinger Fork of cuStinger/cuStinger

This repository contains the cuStinger data structure used for dynamic graph representation.

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Bader-Research/cuStingerAlg Fork of cuStinger/cuStingerAlg

This repository contains streaming graph algorithms using the cuStinger data structure.

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Bader-Research/CUDARMAT

RMAT Graph Generator for NVIDIA CUDA

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Bader-Research/BioPerf

BioPerf: A Benchmark Suite to Evaluate High-Performance Computer Architecture on Bioinformatics Applications

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Bader-Research/biconnected-components

Parallel Biconnected Components

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Bader-Research/PSRS

PSRS: Parallel Sorting using Regular Sampling

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Bader-Research/sorting

Performance evaluation of sequential integer sorting algorithms

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Bader-Research/CellBuzz

CellBuzz: The Sony-Toshiba-IBM Cell Broadband Engine is a heterogeneous multicore architecture that consists of a traditional microprocessor (PPE) with eight SIMD co-processing units (SPEs) integrated on-chip. This repository contains Cell B.E. optimized libraries and software for FFT, MPEG, compression, and encryption.

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Bader-Research/arkouda Fork of Bears-R-Us/arkouda

Arkouda: NumPy-like arrays at massive scale backed by Chapel (a python/chapel package)

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