Bioconductor/Seqinfo

A simple S4 class for storing basic information about a collection of genomic sequences

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Bioconductor/AnVIL

Interact with AnVIL and Leonardo projects

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Bioconductor/BiocPkgDash

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Bioconductor/BiocWorkingGroups

Bioconductor working group guidelines. Also, a list of active, suggested, and inactive working groups for bioconductor for the community to volunteer to be apart of. The community is also welcome to suggest new working groups.

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Bioconductor/txdbmaker

A set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files)

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Bioconductor/GenomeInfoDb

Utilities for manipulating chromosome names, including modifying them to follow a particular naming style

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Bioconductor/SummarizedExperiment

A container (S4 class) for matrix-like assays

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Bioconductor/UniProt.ws

R Interface to UniProt Web Services

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Bioconductor/gbcc2025

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Bioconductor/status.bioconductor.org

Status page for Bioconductor based on cstate hugo site

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Bioconductor/bioconductor-training

Bioconductor teaching and education committee

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Bioconductor/bioconductor.org

Source code for the Bioconductor website

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Bioconductor/archive-sync

Ansible playbook automating the post-release sync into OSN archive of previous release

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Bioconductor/AnnotationHub

Client for the Bioconductor AnnotationHub web resource

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Bioconductor/biocblog

A Quarto blog for Bioconductor community

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Bioconductor/BBS

The Bioconductor Build System

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Bioconductor/ExperimentHub

Client to access ExperimentHub resources

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Bioconductor/AnnotationHubData

Transform public data resources into Bioconductor Data Structures

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Bioconductor/BiocHowTo

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Bioconductor/DelayedArray

A unified framework for working transparently with on-disk and in-memory array-like datasets

Language: R - Size: 1.62 MB - Last synced at: about 23 hours ago - Pushed at: 11 days ago - Stars: 27 - Forks: 9

Bioconductor/BiocReporting

Public repo for Bioconductor project reporting 2022

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Bioconductor/Rsamtools

Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

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Bioconductor/ReleaseLaunch

documentation and R scripts helpful for Bioconductor release

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Bioconductor/AnVILBase

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Bioconductor/AnVILGCP

Functionality for the AnVIL platform using GCP

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Bioconductor/AnVILAz

R / Bioconductor Support for the AnVIL Azure Platform

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Bioconductor/BSgenomeForge

Forge your own BSgenome data package

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Bioconductor/BiocBaseUtils

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Bioconductor/BiocHubsShiny

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Bioconductor/S4Arrays

Foundation of array-like containers in Bioconductor

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Bioconductor/hca

Human Cell Atlas data discovery and retrieval

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Bioconductor/HubPub

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Bioconductor/AnVILPublish

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Bioconductor/BiocIO

Standard input / output framework for use by Bioconductor packages

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Bioconductor/basilisk.utils

Clone of the Bioconductor repository for the basilisk.utils package.

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Bioconductor/BiocSet

Representing Different Biological Sets

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Bioconductor/SQLDataFrame

DataFrame representation of SQL database table

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Bioconductor/basilisk

Clone of the Bioconductor repository for the basilisk package.

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Bioconductor/VCFArray

Extension of DelayedArray with on-disk/remote VCF backend

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Bioconductor/GSE62944

Experiment Data Package for TCGA processed RNA-Seq data

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Bioconductor/DelayedDataFrame

Delayed operation on DataFrame

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Bioconductor/GDSArray

Representing GDS files as array-like objects

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Bioconductor/LoomExperiment

A package to read, write, and manipulate loom files using LoomExperiments. Uses the loom file format from the Linnarson Lab. https://linnarssonlab.org/loompy/

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Bioconductor/VariantExperiment

A RangedSummarizedExperiment Container for VCF/GDS Data with GDS Backend

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Bioconductor/TENxBrainData

An ExperimentHub package for the 1.3 million brain cell 10X single-cell RNA-seq data set.

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Bioconductor/zlibbioc

An R packaged zlib-1.2.5

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Bioconductor/VariantAnnotation

Annotation of Genetic Variants

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Bioconductor/Rhtslib

HTSlib high-throughput sequencing library as an R package

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Bioconductor/RBGL

An interface to the BOOST graph library

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Bioconductor/OrganismDbi

Software to enable the smooth interfacing of different database packages

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Bioconductor/KEGGREST

Client-side REST access to KEGG

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Bioconductor/Icens

NPMLE for Censored and Truncated Data

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Bioconductor/hypergraph

A package providing hypergraph data structures

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Bioconductor/GSEABase

Gene set enrichment data structures and methods

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Bioconductor/graph

graph: A package to handle graph data structures

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Bioconductor/gpls

Classification using generalized partial least squares

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Bioconductor/GenomicRanges

Representation and manipulation of genomic intervals

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Bioconductor/GenomicFiles

Distributed computing by file or by range

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Bioconductor/GenomicFeatures

Query the gene models of a given organism/assembly

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Bioconductor/GenomicAlignments

Representation and manipulation of short genomic alignments

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Bioconductor/geneplotter

Graphics related functions for Bioconductor

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Bioconductor/GeneMeta

MetaAnalysis for High Throughput Experiments

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Bioconductor/genefilter

genefilter: methods for filtering genes from high-throughput experiments

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Bioconductor/DynDoc

Dynamic document tools

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Bioconductor/CoCiteStats

Different test statistics based on co-citation.

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Bioconductor/chipseq

chipseq: A package for analyzing chipseq data

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Bioconductor/Category

Category Analysis

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Bioconductor/bioDist

Different distance measures

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Bioconductor/biocViews

Categorized views of R package repositories

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Bioconductor/Biobase

Biobase: Base functions for Bioconductor

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Bioconductor/AnnotationForge

Tools for building SQLite-based annotation data packages

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Bioconductor/AnnotationDbi

Manipulation of SQLite-based annotations in Bioconductor

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Bioconductor/annotate

Annotation for microarrays

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Bioconductor/ShortRead

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Bioconductor/ExperimentHubData

Add resources to ExperimentHub

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Bioconductor/IRanges

Foundation of integer range manipulation in Bioconductor

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Bioconductor/BSgenome

Software infrastructure for efficient representation of full genomes and their SNPs

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Bioconductor/S4Vectors

Foundation of vector-like and list-like containers in Bioconductor

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Bioconductor/SplicingGraphs

Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them

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Bioconductor/HDF5Array

HDF5 datasets as array-like objects in R

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Bioconductor/XVector

Foundation of external vector representation and manipulation in Bioconductor

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Bioconductor/BiocGenerics

Defines many S4 generic functions used in Bioconductor

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Bioconductor/RaggedExperiment

Matrix-like representations of mutation and CN data

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Bioconductor/BiocFileCache

Manage Files Across Sessions

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Bioconductor/AnnotationFilter

Facilities for Filtering Bioconductor Annotation Resources

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Bioconductor/Organism.dplyr

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Bioconductor/GenomicDataCommons

Provide R access to the NCI Genomic Data Commons portal.

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Bioconductor/BiocStyle

Issues and pull requests for BiocStyle should go here.

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Bioconductor/MatrixGenerics

S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

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Bioconductor/BiocCheck

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Bioconductor/BiocParallel

Bioconductor facilities for parallel evaluation

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Bioconductor/BiocVersion

Size: 19.5 KB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 1 - Forks: 1

Bioconductor/bioconductor_salt

Salt to configure Linux and Mac (x86_64, arm64) for the BBS

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Bioconductor/bioconductor_docker

Docker Containers for Bioconductor

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Bioconductor/SparseArray

High-performance sparse data representation and manipulation in R

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Bioconductor/Biostrings

Efficient manipulation of biological strings

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Bioconductor/pwalign

Perform pairwise sequence alignments

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Bioconductor/UCSC.utils

Low-level utilities to retrieve data from the UCSC Genome Browser

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Bioconductor/updateObject

Find/fix old serialized S4 instances

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Bioconductor/cloudman-boot Fork of CloudVE/cloudman-boot

Build mechanism for cloudman-boot Docker image

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