CSUBioGroup/RoSimTail-ICD

Language: Python - Size: 29.3 KB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 0 - Forks: 0

CSUBioGroup/DP-GPT

Language: Python - Size: 8.61 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 0 - Forks: 0

CSUBioGroup/DeepDTAGen

Language: Python - Size: 4.67 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 11 - Forks: 2

CSUBioGroup/BACPI

A bi-directional attention neural network for compound–protein interaction and binding affinity prediction.

Language: Python - Size: 144 MB - Last synced at: 9 days ago - Pushed at: over 2 years ago - Stars: 32 - Forks: 16

CSUBioGroup/RNA3D-SSCL

RNA3D-SSCL: Improving RNA Tertiary Structure Prediction via a Secondary Structure-Constrained Loss Function

Size: 0 Bytes - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 0 - Forks: 0

CSUBioGroup/MoChat

Official implementation of "MoChat: Joints-Grouped Spatio-Temporal Grounding LLM for Multi-Turn Motion Comprehension and Description".

Language: Python - Size: 1.67 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0

CSUBioGroup/DPGOK

Language: Python - Size: 110 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

CSUBioGroup/2OMe-LM

Predicting 2’-O-methylation Sites in Human RNA Using A Pre-trained RNA Language Model

Language: Python - Size: 335 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

CSUBioGroup/DPFunc

Language: Python - Size: 13.2 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 37 - Forks: 3

CSUBioGroup/PLM-CRISPR

Language: Python - Size: 46.2 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

CSUBioGroup/DTIAM

A unified framework for predicting drug-target interactions, binding affinities and activation/inhibition mechanisms.

Language: Python - Size: 32.1 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 11 - Forks: 2

CSUBioGroup/RNALoc-LM

A pre-trained RNA language model powered for RNA subcellular localization prediction.

Language: Python - Size: 39 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 3 - Forks: 0

CSUBioGroup/scMAE

Language: Python - Size: 18.6 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 4 - Forks: 2

CSUBioGroup/scSHEFT

Language: Python - Size: 0 Bytes - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

CSUBioGroup/scCoRR

Language: Python - Size: 60.5 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

CSUBioGroup/NanoLoop

A Dual-Modality Framework Leveraging Nanopore Sequencing for Chromatin Interaction Prediction

Language: Python - Size: 2.05 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

CSUBioGroup/MoGE

Language: Python - Size: 14.1 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

CSUBioGroup/DeepFMB Fork of csu-syy/PFP-GMB

Enhancing protein function prediction through the fusion of multi-type biological knowledge with protein language model and graph neural network

Language: Python - Size: 52.7 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

CSUBioGroup/CGABepi

Language: Python - Size: 150 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

CSUBioGroup/FusNet

Language: Python - Size: 11.8 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 1

CSUBioGroup/TPepRet

Language: Python - Size: 1.13 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

CSUBioGroup/ComLMEss

Language: Python - Size: 43 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

CSUBioGroup/TransScore

Size: 64.7 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1

CSUBioGroup/DP-BERT

Language: Python - Size: 15.5 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

CSUBioGroup/GoM-ICD

Size: 65.4 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

CSUBioGroup/test002

Size: 418 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

CSUBioGroup/GraphscoreDTA

A novel graph neural network strategy with the Vina distance optimization terms to predict protein-ligand binding affinity

Language: Python - Size: 18.2 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 23 - Forks: 7

CSUBioGroup/CGraphDTA

A fusion-based deep learning architecture for detecting drug-target binding affinity using target sequence and structure

Language: Python - Size: 16.1 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

CSUBioGroup/SpaNN

Language: Python - Size: 8.79 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1

CSUBioGroup/Singularformer

Singularformer: Learning to Decompose Self-Attention to Linearize the Complexity of Transformer

Language: Python - Size: 112 KB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0

CSUBioGroup/TemporalspatialHub Fork of XiangmaoMeng/TemporalspatialHub

Temporal-spatial analysis of the essentiality of hub proteins in protein-protein interaction networks

Size: 2.39 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 1

CSUBioGroup/TripHLApan

Language: Python - Size: 239 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

CSUBioGroup/SPIDE

Language: Python - Size: 22.6 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

CSUBioGroup/SGCL-LncLoc

An interpretable deep learning model for improving lncRNA subcellular localization prediction with supervised graph contrastive learning

Language: Python - Size: 9.23 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

CSUBioGroup/DeepPPISP-1 Fork of MinZeng1990/DeepPPISP

Protein-protein interaction sites prediction through combining local and global features with deep neural networks

Size: 2.72 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

CSUBioGroup/RafClust

A novel random forest similarity learning based clustering method for single cell RNA sequencing data

Language: R - Size: 9.77 KB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

CSUBioGroup/DualRank Fork of xingyili/DualRank

Size: 0 Bytes - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

CSUBioGroup/Ecomap-loop

Language: Shell - Size: 228 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

CSUBioGroup/DMFLDA

A deep learning framework for predicting lncRNA–disease associations

Language: Python - Size: 561 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

CSUBioGroup/DoRC

Discovery of rare cells from ultra-large scRNA-seq data

Language: Python - Size: 582 KB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

CSUBioGroup/3DFunc

Language: C++ - Size: 513 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

CSUBioGroup/CACO

Language: Python - Size: 1.25 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

CSUBioGroup/Dopcc

Detecting overlapping protein complexes via multi-metrics and co-core attachment method

Language: Python - Size: 25.7 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

CSUBioGroup/DMFLDA2

Language: Python - Size: 851 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 1

CSUBioGroup/DyNDG

Identifying Leukemia-Related Genes based on the Time-Series Dynamical Network by Integrating Differential Genes

Language: MATLAB - Size: 5.77 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

CSUBioGroup/BayesImpute

a Bayesian imputation method for single-cell RNA-seq data

Language: R - Size: 130 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 1

CSUBioGroup/DeepGOA

A deep learning framework for gene ontology annotation with sequence- and network-based information

Language: Python - Size: 43 KB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 5 - Forks: 0

CSUBioGroup/CLAIRE-release

Language: Jupyter Notebook - Size: 14.8 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

CSUBioGroup/PrGeFNE

PrGeFNE

Language: MATLAB - Size: 29.3 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

CSUBioGroup/PASS

Evaluation of pathway activation for a single sample toward inflammatory bowel disease classification

Language: MATLAB - Size: 11.2 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

CSUBioGroup/NIMCE

A gene regulatory network inference approach based on multi time delays causal entropy

Language: MATLAB - Size: 1.68 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 0

CSUBioGroup/GraphVAE-DTA

Language: Python - Size: 72.8 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

CSUBioGroup/KAICD

A knowledge attention-based deep learning framework for automatic ICD coding.

Language: Python - Size: 44.9 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 0

CSUBioGroup/FUNMarker

Fusion network-based method to identify prognostic and heterogeneous breast cancer biomarkers

Language: MATLAB - Size: 19 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 1

CSUBioGroup/DeepPPISP

Protein-protein interaction sites prediction through combining local and global features with deep neural networks

Language: Python - Size: 2.71 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 46 - Forks: 12

CSUBioGroup/PGMG

The official PyTorch implementation of PGMG: A Pharmacophore-Guided Deep Learning Approach for Bioactive Molecule Generation.

Language: Python - Size: 46.2 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 45 - Forks: 7

CSUBioGroup/GraphLncLoc

Language: Python - Size: 3.25 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 2

CSUBioGroup/LD-PLAM

A Label Description-based Pseudo Label-wise Attentional Model for Automatic ICD Coding

Language: Python - Size: 604 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 2

CSUBioGroup/BeProf

A comprehensive computational benchmark for evaluating deep learning-based protein function prediction approaches

Language: Python - Size: 9.06 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

CSUBioGroup/LncLocFormer

Language: Python - Size: 675 KB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 1

CSUBioGroup/DeepLncLoc

A deep learning-based lncRNA subcellular localization predictor

Language: Python - Size: 2.1 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 15 - Forks: 10

CSUBioGroup/DeepPPF

Language: Python - Size: 14.8 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 7 - Forks: 0

CSUBioGroup/stAA

Identification of spatial domain

Language: Python - Size: 17.6 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

CSUBioGroup/SDLDA

Predicting lncRNA–disease associations based on singular value decomposition and deep learning techniques

Language: Python - Size: 865 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 5 - Forks: 0

CSUBioGroup/DeepEP

a deep learning framework for essential protein prediction

Language: Python - Size: 2.98 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 13 - Forks: 5

CSUBioGroup/MMCT-Loop

LoopCaller: a comprehensive pipeline to call targeted 3D chromatin loops with mixed model

Language: Python - Size: 1.1 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 3 - Forks: 2

CSUBioGroup/Bacon

Bacon: a comprehensive computational benchmarking framework for evaluating targeted chromatin conformation capture-specific methodologies

Language: R - Size: 368 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 2

CSUBioGroup/RetrieveICD

Retrieve and Rerank for Automated ICD Coding via Contrastive Learning

Language: Python - Size: 688 KB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 4 - Forks: 0

CSUBioGroup/CAKE

Language: Python - Size: 20.5 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

CSUBioGroup/DeepCellEss

An interpretable deep learning-based cell line-specific essential protein predictior

Language: Python - Size: 14 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 4 - Forks: 0

CSUBioGroup/EP-GBDT

EP-GBDT is a computational approach for essential protein prediction by using only sequence information.

Language: Python - Size: 18.9 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 1

CSUBioGroup/scNCL-release

first submit

Language: Jupyter Notebook - Size: 215 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

CSUBioGroup/EP-EDL

Language: Python - Size: 7.83 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 1

CSUBioGroup/Normi

A framework to infer gene regulatory network from scRNA-seq

Language: Jupyter Notebook - Size: 382 KB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0

CSUBioGroup/CellCircLoc

CellCircLoc: Deep Neural Network for Predicting and Explaining Cell line-specific CircRNA Subcellular Localization

Language: Python - Size: 29.1 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1

CSUBioGroup/ACE-main

Language: Jupyter Notebook - Size: 725 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

CSUBioGroup/Bubble

A single-cell RNA-seq imputation method using an autoencoder constrained by bulk RNA-seq data

Language: R - Size: 35.2 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 2

CSUBioGroup/GLOBE-release

A contrastive learning-based batch correction framework for integration of scRNA-seq datasets.

Language: Python - Size: 595 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 2

CSUBioGroup/StackCPA

Language: Python - Size: 104 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 4

CSUBioGroup/SSRE

SSRE: Cell Type Detection Based on Sparse Subspace Representation and Similarity Enhancement

Language: Python - Size: 5.85 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 1

CSUBioGroup/DGP_NIDM Fork of xiangju0208/DGP_NIDM

Size: 2.46 MB - Last synced at: 8 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

CSUBioGroup/DGP_HyMM Fork of xiangju0208/DGP_HyMM

HyMM: Hybrid method for disease-gene prediction by integrating multiscale module structures

Size: 1.52 MB - Last synced at: 8 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

CSUBioGroup/DGP_PrGeFNE Fork of xiangju0208/DGP_PrGeFNE

PrGeFNE: Predicting disease-related genes by fast network embedding

Size: 11.7 KB - Last synced at: 8 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0