CellProfiler/CellProfiler

An open-source application for biological image analysis

Language: Python - Size: 187 MB - Last synced at: about 14 hours ago - Pushed at: about 15 hours ago - Stars: 976 - Forks: 391

CellProfiler/tutorials

CellProfiler tutorial pipelines and images

Language: Jupyter Notebook - Size: 1.85 GB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 93 - Forks: 86

CellProfiler/CellProfiler-plugins

Community-contributed and experimental CellProfiler modules.

Language: Python - Size: 39.6 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 64 - Forks: 69

CellProfiler/python-bioformats

Read and write life sciences file formats

Language: Python - Size: 219 MB - Last synced at: 10 days ago - Pushed at: 8 months ago - Stars: 139 - Forks: 48

CellProfiler/CellProfiler-Analyst

Open-source software for exploring and analyzing large, high-dimensional image-derived data.

Language: Python - Size: 70.7 MB - Last synced at: 2 days ago - Pushed at: 9 months ago - Stars: 153 - Forks: 73

CellProfiler/centrosome

An open source image processing library

Language: Python - Size: 1.84 MB - Last synced at: 6 days ago - Pushed at: about 1 month ago - Stars: 19 - Forks: 36

CellProfiler/python-javabridge Fork of LeeKamentsky/python-javabridge

Python wrapper for the Java Native Interface

Language: Python - Size: 2.68 MB - Last synced at: 23 days ago - Pushed at: 8 months ago - Stars: 22 - Forks: 13

CellProfiler/core

Core classes and components used by CellProfiler

Language: Python - Size: 64.2 MB - Last synced at: 15 days ago - Pushed at: 6 months ago - Stars: 6 - Forks: 24

CellProfiler/.github

Default files are stored here, such as code of conduct

Size: 2.93 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

CellProfiler/distribution

Everything needed to build CellProfiler for your favorite environment.

Language: Python - Size: 161 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 4 - Forks: 6

CellProfiler/notebooks

Jupyter notebooks for CellProfiler and friends

Language: Jupyter Notebook - Size: 5.43 MB - Last synced at: 8 months ago - Pushed at: about 7 years ago - Stars: 12 - Forks: 6

CellProfiler/examples

Example CellProfiler pipelines.

Language: Makefile - Size: 193 MB - Last synced at: 8 months ago - Pushed at: almost 3 years ago - Stars: 11 - Forks: 14

CellProfiler/prokaryote

CellProfiler’s Java dependencies

Language: Java - Size: 546 KB - Last synced at: 19 days ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 11

CellProfiler/CellProfiler-1.0 📦

:warning: ARCHIVED :warning: CellProfiler 1.0 (Matlab-based), current version at: CellProfiler/CellProfiler

Language: Matlab - Size: 10.3 MB - Last synced at: 8 months ago - Pushed at: over 7 years ago - Stars: 9 - Forks: 8

CellProfiler/stitching

Image stitching

Language: Python - Size: 1.69 MB - Last synced at: 8 months ago - Pushed at: over 6 years ago - Stars: 11 - Forks: 6

CellProfiler/CellProfiler-Explorer

Web app for exploring CellProfiler data and combining with metadata

Language: Python - Size: 23.4 KB - Last synced at: 8 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

CellProfiler/docker 📦

Language: Makefile - Size: 29.3 KB - Last synced at: 8 months ago - Pushed at: over 7 years ago - Stars: 2 - Forks: 10

CellProfiler/jenkins 📦

Language: Shell - Size: 71.3 KB - Last synced at: 8 months ago - Pushed at: over 9 years ago - Stars: 1 - Forks: 2

CellProfiler/CellProfiler-rpm 📦

Size: 160 KB - Last synced at: 8 months ago - Pushed at: about 10 years ago - Stars: 0 - Forks: 1

CellProfiler/tutorial 📦

Language: Python - Size: 1.3 MB - Last synced at: 8 months ago - Pushed at: about 9 years ago - Stars: 0 - Forks: 3

CellProfiler/BatchProfiler 📦

Language: Python - Size: 29.1 MB - Last synced at: 8 months ago - Pushed at: about 9 years ago - Stars: 1 - Forks: 1

CellProfiler/CPCharm 📦

Language: Python - Size: 5.5 MB - Last synced at: 8 months ago - Pushed at: over 10 years ago - Stars: 2 - Forks: 2

CellProfiler/CellProfiler-build 📦

Infrastructure for continuous integration and automatic builds of CellProfiler internally at the Broad institute

Language: Python - Size: 194 KB - Last synced at: 8 months ago - Pushed at: about 10 years ago - Stars: 1 - Forks: 3

CellProfiler/cellprofiler.github.com-backup 📦

OLD cp website repo. Current repo is here: https://github.com/CellProfiler/cellprofiler.github.com. We are currently in the process of transferring any remaining and relevant issues to the current Github repo so that this repo can then be deleted.

Language: HTML - Size: 147 MB - Last synced at: 8 months ago - Pushed at: about 8 years ago - Stars: 3 - Forks: 2

CellProfiler/cellprofiler.github.com 📦

CellProfiler Website

Language: JavaScript - Size: 96.7 MB - Last synced at: 8 months ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 4

CellProfiler/library 📦

Language: Python - Size: 5.86 KB - Last synced at: 8 months ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 1

CellProfiler/meoir

Profiling modules from CellProfiler-Analyst for exploring and analyzing large, high-dimensional image-derived data. http://cellprofiler.org

Language: Python - Size: 177 KB - Last synced at: 8 months ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 1

CellProfiler/pyinstaller Fork of pyinstaller/pyinstaller

Freeze (package) Python programs into stand-alone executables

Language: Python - Size: 39.9 MB - Last synced at: 8 months ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 1

CellProfiler/RFC

A place to propose new features for CellProfiler

Size: 225 KB - Last synced at: 8 months ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

CellProfiler/knime-bridge

ZMQ connection between CellProfiler and Knime

Language: Java - Size: 250 KB - Last synced at: 8 months ago - Pushed at: over 9 years ago - Stars: 1 - Forks: 1