ColeLab/ActflowToolbox

The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.

Language: Python - Size: 134 MB - Last synced at: 29 days ago - Pushed at: 4 months ago - Stars: 39 - Forks: 12

ColeLab/CombinedFC

Repository for Sanchez-Romero, R., & Cole, M. W. (2021). "Combining multiple functional connectivity methods to improve causal inferences". Journal of cognitive neuroscience, 33(2), 180-194. https://doi.org/10.1162/jocn_a_01580

Language: Jupyter Notebook - Size: 1.2 GB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 21 - Forks: 6

ColeLab/MultipleComparisonsPermutationTesting

Code to perform FWE-correction for multiple comparisons using permutation testing (see Nichols & Holmes, 2001)

Language: MATLAB - Size: 49.8 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 7 - Forks: 3

ColeLab/ColeAnticevicNetPartition

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

Language: C - Size: 117 MB - Last synced at: 9 months ago - Pushed at: over 4 years ago - Stars: 65 - Forks: 20

ColeLab/CPRO2_learning_release

Language: C - Size: 1.13 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

ColeLab/DirectedActflow_release

Repository for Sanchez-Romero, R., Ito, T., Mill, R. D., Hanson, S. J., & Cole, M. W. (2023). "Causally informed activity flow models provide mechanistic insight into network-generated cognitive activations". NeuroImage, 120300. https://doi.org/10.1016/j.neuroimage.2023.120300

Language: Jupyter Notebook - Size: 841 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1

ColeLab/ClinicalActFlow_release

Language: Jupyter Notebook - Size: 3.41 MB - Last synced at: 11 months ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 1

ColeLab/informationtransfermapping

Public code release for Ito, Kulkarni, Schultz, Mill, Chen, Solomyak, Cole (2017)

Language: Jupyter Notebook - Size: 175 MB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 6 - Forks: 4

ColeLab/TaskFCRemoveMeanActivity

Code for running simulations and data analysis from: Cole MW, Ito T, Schultz D, Mill R, Chen R, Cocuzza C (2019). "Task activations produce spurious but systematic inflation of task functional connectivity estimates". NeuroImage. doi:10.1016/j.neuroimage.2018.12.054 https://authors.elsevier.com/a/1YNWs3lc~r3Jbx

Language: Roff - Size: 7.16 MB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 9 - Forks: 3

ColeLab/actflowmapping

Data analysis code associated with Cole et al. (2016), Nature Neuroscience

Language: MATLAB - Size: 6.84 KB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 5 - Forks: 4

ColeLab/FlexHubMechanism

Publicly available code for "A flexible hub connectivity mechanism for cognitive control". Manuscript in-preparation. Part of C. Cocuzza's dissertation (Aim 3).

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ColeLab/controlCartography

Code for: "Flexible coordinator and switcher hubs for adaptive task control". Cocuzza et al., 2020 (In Press). Journal of Neuroscience.

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ColeLab/ActFlowCategories

Publicly available code for "Distributed network processes account for the majority of variance in localized visual category selectivity", Cocuzza et al., 2022.

Language: Jupyter Notebook - Size: 477 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ColeLab/AgingActflow_release

Public code release for Mill, Gordon, Balota & Cole (2020): "Predicting dysfunctional age-related task activations from resting-state network alterations"

Language: MATLAB - Size: 26.4 KB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 0

ColeLab/DynamicSensoryMotorEGI_release

Language: MATLAB - Size: 27.3 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

ColeLab/TaskFCActflow_release

Code release for Cole et al. (2021) "The functional relevance of task-state functional connectivity", Journal of Neuroscience

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ColeLab/hierarchy2020

code base for Ito T, Hearne LJ, Cole MW (2020). "A cortical hierarchy of localized and distributed processes revealed via dissociation of task activations, connectivity changes, and intrinsic timescales"

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ColeLab/Motion_tACS_fMRI

Kar, Ito, Cole, Krekelberg - Collaboration with Krekelberg lab

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ColeLab/simplesims

A simple simulation framework for testing brain functional connectivity methods

Language: R - Size: 25.4 KB - Last synced at: over 2 years ago - Pushed at: over 9 years ago - Stars: 3 - Forks: 1