ComputationalPhysiology/mps

Tools for working with mps files

Language: Python - Size: 7.55 MB - Last synced at: 1 day ago - Pushed at: 3 days ago - Stars: 2 - Forks: 0

ComputationalPhysiology/simcardems

Simula Cardiac ElectroMechanics Solver

Language: Python - Size: 63.9 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 11 - Forks: 11

ComputationalPhysiology/cardiac-geometries-core

Gmsh files for cardiac geometries

Language: Python - Size: 107 KB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 0 - Forks: 0

ComputationalPhysiology/ap_features

Package to compute features of traces from action potential models

Language: Python - Size: 5.06 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 8 - Forks: 3

ComputationalPhysiology/circulation

Cardiac Circulation Models

Language: Python - Size: 132 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 2 - Forks: 0

ComputationalPhysiology/cardiac-geometries

Tool for creating idealised cardiac geometries and microstructure

Language: Python - Size: 6.94 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 7 - Forks: 2

ComputationalPhysiology/mps_motion

Library for tracking motion in cardiac mps data

Language: Python - Size: 14.1 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 1 - Forks: 0

ComputationalPhysiology/cardiac-geometriesx

Cardiac-geometries for dolfinx

Language: Python - Size: 4 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 5 - Forks: 1

ComputationalPhysiology/zero-mech

Simple 0D mechanics simulator

Language: Python - Size: 149 KB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 2 - Forks: 0

ComputationalPhysiology/ukb-atlas

Generate meshes from UK Biobank atlas

Language: Python - Size: 338 KB - Last synced at: 2 days ago - Pushed at: 11 days ago - Stars: 5 - Forks: 1

ComputationalPhysiology/oasisx

Next generation Open Source Navier Stokes solver using FEniCSx

Language: Python - Size: 425 KB - Last synced at: 2 days ago - Pushed at: 12 days ago - Stars: 6 - Forks: 1

ComputationalPhysiology/MAD-SSA

Tool for analysis of Mitral annulus disjunction and statistical shape analysis

Language: Python - Size: 39.3 MB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 0 - Forks: 0

ComputationalPhysiology/modelgraph

A tool for visualizing dependencies between different components of your model

Language: Python - Size: 1.78 MB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 2 - Forks: 0

ComputationalPhysiology/awesome

Awesome list for Computational Physiology

Size: 14.6 KB - Last synced at: 8 days ago - Pushed at: over 4 years ago - Stars: 10 - Forks: 0

ComputationalPhysiology/sscp25-deep-learning-cardiac-mechanics

Example code for SSCP project on Deep Learning for cardiac mechanics

Language: Python - Size: 5.86 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

ComputationalPhysiology/simcardemsx

Language: Python - Size: 51.8 KB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 2 - Forks: 0

ComputationalPhysiology/ciucci-2024

Source code for reproducing results of ciucci-2024 paper

Language: Python - Size: 7.13 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

ComputationalPhysiology/goss

General ODE System Solver

Language: C++ - Size: 18.6 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 0

ComputationalPhysiology/pulse_adjoint

An adjointable cardiac mechanics data assimilator.

Language: Python - Size: 16.9 MB - Last synced at: 6 months ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

ComputationalPhysiology/pulse_adjoint_deprecated

Data assimilation for cardiac mechanics

Language: Python - Size: 48.6 MB - Last synced at: 2 months ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 2

ComputationalPhysiology/cbcbeat

An adjoint-enabled framework for computational cardiac electrophysiology

Language: Python - Size: 36 MB - Last synced at: 4 days ago - Pushed at: almost 2 years ago - Stars: 7 - Forks: 0

ComputationalPhysiology/constrained_mixture_models

Software and documentation for exploring homogenized constrained mixture models for cardiac growth and remodeling

Language: TeX - Size: 17.5 MB - Last synced at: 1 day ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

ComputationalPhysiology/automatic-motion-estimation

Source code for reproducing results in the paper "Automatic motion estimation with applications to hiPSC-CMs"

Language: Jupyter Notebook - Size: 58.6 KB - Last synced at: 2 days ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

ComputationalPhysiology/pseudo-ecg

Library to compute pseudo ECG from bidomain and monodomain simulations

Language: Python - Size: 74.2 KB - Last synced at: 4 days ago - Pushed at: almost 2 years ago - Stars: 3 - Forks: 0

ComputationalPhysiology/simcardems2

Language: Python - Size: 150 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

ComputationalPhysiology/simula-tools-meetup Fork of minrk/simula-tools-meetup

Language: Jupyter Notebook - Size: 15.7 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 2

ComputationalPhysiology/pulse 📦

A software for solving problems in cardiac mechanics using FEniCS

Language: Python - Size: 242 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 2

ComputationalPhysiology/codetiming Fork of realpython/codetiming

A flexible, customizable timer for your Python code

Language: Python - Size: 36.1 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

ComputationalPhysiology/uq_mechanics

Language: C++ - Size: 2.49 MB - Last synced at: 3 months ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0

ComputationalPhysiology/drug-database

Command line interface for getting info about drugs

Language: Python - Size: 46.9 KB - Last synced at: 1 day ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

ComputationalPhysiology/mps-database-dashapp

Language: Python - Size: 22.5 KB - Last synced at: 6 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

ComputationalPhysiology/SSCP_2023_project6

Model codes and demos for Simula summer school 2023 project 6

Language: Python - Size: 55.7 KB - Last synced at: 6 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

ComputationalPhysiology/tissue-detection

Library for detecting tissue

Language: Python - Size: 2.55 MB - Last synced at: 2 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

ComputationalPhysiology/m3h3

An open source framework for cardiac modelling using FEniCS.

Language: Python - Size: 199 KB - Last synced at: about 1 month ago - Pushed at: over 5 years ago - Stars: 5 - Forks: 1

ComputationalPhysiology/odesolver

General suite of ODE solvers

Language: Python - Size: 31.3 KB - Last synced at: 3 days ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

ComputationalPhysiology/computationalphysiology.github.io

Home page https://computationalphysiology.github.io

Size: 3.1 MB - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

ComputationalPhysiology/ldrb

A software for assigning myocardial fiber orientations based on the Laplace Dirichlet Ruled-Based algorithm

Language: Python - Size: 15.4 MB - Last synced at: 6 months ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 0

ComputationalPhysiology/uio-digital-scholarship-days

Material for workshop on Digital Scholarship Days at UiO

Language: C - Size: 9 MB - Last synced at: 6 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

ComputationalPhysiology/mps_database_json_files

Language: Python - Size: 262 KB - Last synced at: 6 months ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

ComputationalPhysiology/simula-lights

Tool controlling the lights at KA23

Language: Python - Size: 10.7 KB - Last synced at: 6 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1

ComputationalPhysiology/mps_automation

Scripts for automating the mps analysis

Language: Python - Size: 91.8 KB - Last synced at: 6 months ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

ComputationalPhysiology/mps_data_parser

Tool for parsing information from filenames

Language: Python - Size: 125 KB - Last synced at: 6 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

ComputationalPhysiology/fenics-nlsode

Coupled nonlinear solver and ode solver in FEniCS

Language: CMake - Size: 14.6 KB - Last synced at: about 2 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ComputationalPhysiology/github-pages-tutorial

Language: Python - Size: 222 KB - Last synced at: 6 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ComputationalPhysiology/gotran

Library for declaring and translating ODEs

Language: Python - Size: 10.7 MB - Last synced at: 9 days ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 1

ComputationalPhysiology/modelparameters

Library for declaring nested parameteres in Python

Language: Python - Size: 11.4 MB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

ComputationalPhysiology/docker_workflows

A simple guide on how to use docker in your development workflow

Language: Jupyter Notebook - Size: 238 KB - Last synced at: about 1 month ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 2

ComputationalPhysiology/pytip

cli for tips and tricks

Language: Python - Size: 9.77 KB - Last synced at: 6 months ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

ComputationalPhysiology/hpc-ca-phospattern

Code and geometries for running simulations. The model is described in "Nanoscale organization of ryanodine receptor distribution and phosphorylation pattern determines the dynamics of calcium sparks"

Language: C++ - Size: 1.39 MB - Last synced at: 6 months ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

ComputationalPhysiology/instant

Language: Python - Size: 601 KB - Last synced at: 6 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

ComputationalPhysiology/mesh-generation-guide

A visual guide to mesh generation from medical images using open-source tools available for any operating system.

Size: 10.9 MB - Last synced at: 6 months ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

ComputationalPhysiology/fenics-geometry

A library handling geometries for Fenics-based problems. Based on pulse.geometry by Henrik Finsberg

Language: Python - Size: 11.4 MB - Last synced at: 6 months ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

ComputationalPhysiology/heart_cells_in_action

A collection of notebooks for learning about cardiac cell models

Language: Jupyter Notebook - Size: 4.17 MB - Last synced at: 6 months ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

ComputationalPhysiology/perspect

PerSPECT: Perfusion SPECT model.

Language: Python - Size: 191 KB - Last synced at: 6 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

ComputationalPhysiology/slackbot

Post updates on Slack for the Computational Physiology department at Simula

Language: Python - Size: 19.5 KB - Last synced at: 6 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

ComputationalPhysiology/journal_club

List of relevant papers for journal cub in Computational Physiology department at Simula

Language: Jupyter Notebook - Size: 64.5 KB - Last synced at: 3 months ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

ComputationalPhysiology/Suurph_mechanics_docker

Docker files, notebooks and data for mechanics stream of Suurph summer school 2019

Language: Jupyter Notebook - Size: 1.66 MB - Last synced at: 6 months ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 1