DNAstack/data-connect-trino

Cloned from https://github.com/DNAstack/ga4gh-search-adapter-presto

Language: Java - Size: 3.19 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 4 - Forks: 3

DNAstack/cromwell-wes-service

Language: Java - Size: 529 KB - Last synced at: 3 days ago - Pushed at: 4 days ago - Stars: 10 - Forks: 1

DNAstack/HiFi-human-WGS-WDL Fork of PacificBiosciences/HiFi-human-WGS-WDL

Language: WDL - Size: 794 KB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 0 - Forks: 0

DNAstack/wdl-common Fork of PacificBiosciences/wdl-common

Fork of PacBio's wdl-common repo

Language: WDL - Size: 253 KB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 0 - Forks: 0

DNAstack/cromwell-on-gcp-workbench-engine-installer

Documentation and tools for creating a Cromwell installation on GCP compatible with DNAstack's Workbench.

Language: HCL - Size: 86.9 KB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 3 - Forks: 0

DNAstack/bioinformatics-public-docker-images

Language: Dockerfile - Size: 201 KB - Last synced at: 9 days ago - Pushed at: 10 days ago - Stars: 0 - Forks: 0

DNAstack/dnastack-client

The command line interface and client library for DNAstack services and GA4GH-compatible service, implemented in Python

Language: Python - Size: 957 KB - Last synced at: 11 days ago - Pushed at: 12 days ago - Stars: 0 - Forks: 0

DNAstack/actuator-e2e-test

Library for testing /actuator endpoint

Language: Java - Size: 101 KB - Last synced at: 16 days ago - Pushed at: 17 days ago - Stars: 0 - Forks: 0

DNAstack/logback-extensions

Extensions to logback for smoother integration with cloud environments.

Language: Java - Size: 36.1 KB - Last synced at: 16 days ago - Pushed at: 17 days ago - Stars: 0 - Forks: 0

DNAstack/concourse-oci-helm-chart-resource Fork of cloudoperators/concourse-oci-helm-chart-resource

Concourse resource for Helm charts in OCI registries

Language: Go - Size: 60.5 KB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 0 - Forks: 0

DNAstack/iceberg Fork of apache/iceberg

Apache Iceberg

Size: 49.8 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

DNAstack/concourse-helm3-resource Fork of concourse-helm3-resource/concourse-helm3-resource

Concourse resource to deploy Helm v3 charts.

Language: Shell - Size: 141 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

DNAstack/wdl-ci

Tools to validate and test WDL-based repositories. To be used as part of CI/CD pipelines

Language: Python - Size: 302 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 5 - Forks: 1

DNAstack/aws-healthomics-engine-installer

Language: HCL - Size: 30.3 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 2 - Forks: 0

DNAstack/temp-test-repo-one

Size: 1000 Bytes - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

DNAstack/temp-test-repo-three

Size: 1000 Bytes - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

DNAstack/temp-test-repo-two

Size: 1000 Bytes - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

DNAstack/cromwell-on-azure-workbench-engine-installer

Documentation and tools for creating a CromwellOnAzure installation compatible with DNAstack's Workbench.

Language: HCL - Size: 39.1 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

DNAstack/ga4gh-search-adapter-google-sheets

Dataset API wrapper for Google Sheets

Language: Java - Size: 119 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 1 - Forks: 0

DNAstack/dnastack-frontend-blank 📦

This is used to establish a scope

Size: 0 Bytes - Last synced at: 2 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

DNAstack/ga4gh-service-info Fork of ga4gh-discovery/ga4gh-service-info

GA4GH service-info specification.

Size: 334 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

DNAstack/ga4gh-discovery-service-registry-impl Fork of ga4gh-discovery/ga4gh-service-registry-impl 📦

Language: Java - Size: 352 KB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

DNAstack/ddap-dam-admin 📦

DDAP Data Access Manager Administration

Language: TypeScript - Size: 5.01 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

DNAstack/ddap-explore 📦

DDAP Explore

Language: Java - Size: 6.75 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

DNAstack/ddap-ic-admin 📦

DDAP Identity Concentrator Administration

Language: Java - Size: 3.54 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

DNAstack/ddap-cli 📦

Command-line client for requesting DAM access tokens

Language: Java - Size: 133 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 0

DNAstack/wdl-mothur

wdl-mothur is a repository featuring a Workflow Description Language (WDL) pipeline for seamless processing of 16S rRNA data using Mothur, enabling reproducible and customizable analysis of microbial communities.

Language: WDL - Size: 207 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

DNAstack/covid-19-signal Fork of jaleezyy/covid-19-signal 📦

Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

Language: Python - Size: 391 KB - Last synced at: almost 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

DNAstack/pipeline Fork of ForomePlatform/pipeline

Pipeline Workflows

Language: wdl - Size: 52.7 KB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

DNAstack/mssng-db6-ccdg-alignment-and-calling

Workflows for processing MSSNG db6 samples.

Language: wdl - Size: 48.8 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

DNAstack/data-explorer Fork of metabase/metabase

The simplest, fastest way to get business intelligence and analytics to everyone in your company :yum:

Language: Clojure - Size: 276 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

DNAstack/fasp-scripts Fork of ga4gh/fasp-scripts

Size: 17.5 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

DNAstack/ga4gh-discovery-search Fork of ga4gh-discovery/data-connect

GA4GH Search API specification.

Size: 2.21 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

DNAstack/dnastack-wdl-ci

Github Action for wdl-ci - Test WDL workflows via DNAstack Workbench

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DNAstack/sample-workflows

Sample bioinformatics workflows

Language: wdl - Size: 8.79 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

DNAstack/healthcare-federated-access-services-archived

Archived fork of Google Cloud HFAS repo (needed to be re-forked)

Language: Go - Size: 5.96 MB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

DNAstack/ddap-libraries 📦

DDAP's common components shared across multiple DDAP solutions

Language: TypeScript - Size: 958 KB - Last synced at: 26 days ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

DNAstack/ddap-common-java 📦

Shared code for DDAP Java apps

Language: Java - Size: 4.97 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

DNAstack/tables-api-cli 📦

Dataset API Command-Line Interface

Language: Java - Size: 278 KB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

DNAstack/ga4gh-search-adapter-presto 📦

Language: Java - Size: 3.86 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

DNAstack/pacbio-trgt-pipeline 📦

Language: wdl - Size: 26.4 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 1

DNAstack/PacBio_CoSA 📦

SARS-CoV-2 analysis of PacBio reads using the CoSA pipeline

Language: wdl - Size: 17.6 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

DNAstack/parabricks-wdl Fork of clara-parabricks-workflows/parabricks-wdl

Accelerated genomics workflows in the Workflow Description Language

Size: 157 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

DNAstack/bioinformatics-scripts

Scripts and resources for the bioinformatics team

Language: Shell - Size: 28.3 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

DNAstack/search-python-client

GA4GH and DRS search for DNAstack's Covidcloud

Language: Python - Size: 5.68 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

DNAstack/PacBio

Language: wdl - Size: 70.3 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

DNAstack/synthdnm Fork of james-guevara/synthdnm

This tool allows for training de novo classifiers via creating "synthetic de novos" from private, inherited variants.

Size: 1.27 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

DNAstack/covid-processing-pipeline

Workflows and containers for processing COVID-19 data.

Language: wdl - Size: 119 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 2

DNAstack/ismb-2022-ga4gh-tutorial Fork of ga4gh/ismb-2022-ga4gh-tutorial

ISMB 2022 tutorial on FASP and Starter Kit

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DNAstack/publisher-connector-spi

DNAstack Publisher Connector SPI

Size: 131 KB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

DNAstack/monkeypox-processing-pipeline

Workflows and containers for analyzing the Monkeypox virus

Language: wdl - Size: 24.4 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

DNAstack/clyde

This is a Hugo theme for top kek documentation.

Language: CSS - Size: 2.79 MB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 1

DNAstack/Oxford_Nanopore_ARTIC

WDL-based analyis of single-ended Oxford Nanopore SARS-CoV-2 reads using the ARTIC pipeline

Language: wdl - Size: 14.6 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

DNAstack/Illumina_SIGNAL

WDL-based analysis of paired-end Illumina SARS-CoV-2 reads using the SIGNAL pipeline

Language: wdl - Size: 16.6 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

DNAstack/publisher-connector-example-app

A starter app for creating a new connector for Publisher.

Language: TypeScript - Size: 93.8 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

DNAstack/fasp-hackathon-2022

Language: Shell - Size: 1.28 MB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 1

DNAstack/explorer-search-client-r

R search client for DNAstack Explorer

Language: R - Size: 30.3 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

DNAstack/gatekeeper

Gatekeeper

Language: Java - Size: 293 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

DNAstack/dnastack-open-data

SARS-CoV-2 sequencing data processed by DNAstack

Language: wdl - Size: 12.7 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

DNAstack/dnastack-client-library-worked-examples

Language: Shell - Size: 211 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

DNAstack/open-data-registry Fork of awslabs/open-data-registry

A registry of publicly available datasets on AWS

Language: Python - Size: 2.61 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

DNAstack/GraphAlignmentViewer Fork of Illumina/GraphAlignmentViewer

Size: 738 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

DNAstack/homebrew-dnastack

A Homebrew Tap for the DNAstack CLI

Language: Ruby - Size: 2.93 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

DNAstack/healthcare-federated-access-services Fork of GoogleCloudPlatform/healthcare-federated-access-services

Language: Go - Size: 10.1 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

DNAstack/public-dnastack-cli

Public Release repo of the DNAstack CLI

Size: 0 Bytes - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

DNAstack/ga4gh-service-registry-spec Fork of ga4gh-discovery/ga4gh-service-registry

Specification for GA4GH Service Registry.

Size: 348 KB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

DNAstack/ga4gh-search-client-r

GA4GH Search client for R

Language: R - Size: 8.79 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

DNAstack/drs-client-gcs Fork of ekeilty17/DOS-Server-GCP-Wrapper

Uploads data from a public GCS Bucket into a DOS Server

Language: Java - Size: 70.3 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

DNAstack/plenary-2020

Size: 1.95 KB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

DNAstack/plenary-resources-2020

Resources for the GA4GH 2020 Plenary.

Language: wdl - Size: 146 KB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 1

DNAstack/wdl4j Fork of patmagee/wdl4j

Java Bindings for Working with the Workflow Descriptor Language

Language: Java - Size: 381 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

DNAstack/dnastack-brand-assets

Size: 424 KB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

DNAstack/dockstore Fork of dockstore/dockstore

Our VM/Docker sharing infrastructure and management component

Language: Java - Size: 29.2 MB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

DNAstack/CromwellOnAzure Fork of microsoft/CromwellOnAzure

A scalable implementation of the Cromwell workflow engine that leverages Azure Batch

Language: C# - Size: 871 KB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

DNAstack/mssng-db6-workflows

Language: Shell - Size: 16.6 KB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

DNAstack/mssng-db6-vqsr

Language: wdl - Size: 7.81 KB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

DNAstack/mssng-db6-variant-metrics

Language: wdl - Size: 5.86 KB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

DNAstack/mssng-db6-joint-genotype-merge-by-chr

Language: wdl - Size: 6.84 KB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

DNAstack/mssng-db6-joint-genotype-by-region

Language: wdl - Size: 7.81 KB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

DNAstack/mssng-db6-exract-valid-chromosome-vcfs

Language: wdl - Size: 6.84 KB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

DNAstack/ddap-frontend

Data Discovery and Access Portal Frontend

Language: Java - Size: 5.89 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

DNAstack/ga4gh-discovery-search-impl-beacon-network

Beacon Network implementation of GA4GH Discovery Search

Language: Java - Size: 27.6 MB - Last synced at: over 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

DNAstack/pgp-canada-schema

Public Object Schema

Size: 3.91 KB - Last synced at: over 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

DNAstack/dos-server Fork of ekeilty17/GA4GH-DOS-Server

Language: Java - Size: 31.8 MB - Last synced at: over 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0

DNAstack/dos-client-pgp Fork of ekeilty17/DOS-Server-PGP-Wrapper

Uploads public PGP Canada Data to a DOS Server

Language: Java - Size: 24.4 KB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

DNAstack/biosamples-v4 Fork of EBIBioSamples/biosamples-v4

The source code for the new version of the EMBL-EBI BioSamples database

Language: Java - Size: 25.7 MB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

DNAstack/presto Fork of trinodb/trino

Official home of Presto, the distributed SQL query engine for big data

Language: Java - Size: 74.2 MB - Last synced at: over 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0

DNAstack/google-cloud-java Fork of googleapis/google-cloud-java

Google Cloud Client Library for Java

Language: Java - Size: 743 MB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

DNAstack/rhq Fork of rhq-project/rhq

RHQ system management and monitoring framework

Language: Java - Size: 133 MB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

DNAstack/dnastack-public

Size: 181 KB - Last synced at: over 2 years ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0