Daylily-Informatics/bloom

Templated Abstract Polymorphic (and opinionated) LIMS

Language: Python - Size: 11.5 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 0 - Forks: 1

Daylily-Informatics/daylily

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

Language: Python - Size: 339 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 23 - Forks: 2

Daylily-Informatics/daylily_giab_analyses

Language: HTML - Size: 101 MB - Last synced at: about 1 month ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

Daylily-Informatics/slim_goodie

Minimal http server ( fastapi jinja2 supabase oauth2 )

Language: Python - Size: 2.07 MB - Last synced at: 3 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

Daylily-Informatics/.github

github profile README.md

Size: 33.2 KB - Last synced at: 2 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

Daylily-Informatics/zebra_day

Zebra Label Printing library & API (for network connected printers). Manage 100s of printers and ZPL label templates in one place.

Language: Python - Size: 19.2 MB - Last synced at: 28 days ago - Pushed at: about 1 year ago - Stars: 9 - Forks: 2

Daylily-Informatics/github_markdown_text_colorizer

Service to return images of text where the input text can have font, font size and color set

Language: Python - Size: 15.4 MB - Last synced at: 2 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

Daylily-Informatics/fedex_tracking_day

Python Module Interfacing w/The FedEx Tracking API

Language: Python - Size: 27.3 KB - Last synced at: 22 days ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

Daylily-Informatics/snakemake Fork of snakemake/snakemake

This is the development home of the workflow management system Snakemake. For general information, see

Size: 88.5 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

Daylily-Informatics/rna-seq-star-deseq2 Fork of snakemake-workflows/rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

Language: Python - Size: 16.6 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

Daylily-Informatics/snakemake-executor-plugin-pcluster-slurm

slurm executor for use by snakemake when running on the slurm flavor which is unique to aws parallel cluster slrum pcluster.

Language: Python - Size: 170 KB - Last synced at: 28 days ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

Daylily-Informatics/snakemake-executor-plugin-pcluster-slurm-ref Fork of snakemake/snakemake-executor-plugin-slurm

A Snakemake executor plugin for submitting jobs to a SLURM cluster

Language: Python - Size: 168 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0

Daylily-Informatics/metapub_peep

Slim fastapi / jinja2 web application to expose metapub command line functionality.

Language: Python - Size: 4.88 KB - Last synced at: 2 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

Daylily-Informatics/xcures_day

python wrapper for the xcures REST api

Language: Python - Size: 5.86 KB - Last synced at: 2 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

Daylily-Informatics/jinja2_fmt_day

Simple tool to standardize the indentation of jinja2 files.

Language: Python - Size: 3.91 KB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Daylily-Informatics/img_stitcher_day

Playing around with merging images taken of the outside of a tube.

Language: Python - Size: 83.3 MB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

Daylily-Informatics/yaml_config_day

Slim Python yaml Config Manager

Language: Python - Size: 26.4 KB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Daylily-Informatics/libmaus Fork of gt1/libmaus

libmaus

Size: 23.7 MB - Last synced at: about 2 years ago - Pushed at: about 10 years ago - Stars: 0 - Forks: 0

Daylily-Informatics/sambamba Fork of biod/sambamba

Tools for working with SAM/BAM data

Size: 3.67 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

Daylily-Informatics/accept-a-payment Fork of stripe-samples/accept-a-payment

Learn how to accept a payment from customers around the world with a variety of payment methods.

Size: 21.1 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

Daylily-Informatics/e-commerce-site Fork of jermynyeo/e-commerce-site

Fullstack e-commerce POS system with bookings, customer and payments implementing microservice architecture. Containerised and hosted on AWS with Kong Gateway.

Size: 11.2 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

Daylily-Informatics/cronicle-edge Fork of cronicle-edge/cronicle-edge

Cronicle V2 (Orchestra) community prototype

Size: 1.02 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

Daylily-Informatics/HGTector Fork of qiyunlab/HGTector

HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.

Size: 6.69 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

Daylily-Informatics/MindTheGap Fork of GATB/MindTheGap

MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.

Size: 1.35 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

Daylily-Informatics/VerifyBamID Fork of Griffan/VerifyBamID

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

Size: 68.7 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

Daylily-Informatics/alignstats Fork of jfarek/alignstats

Comprehensive alignment, whole-genome coverage, and capture coverage statistics.

Size: 124 KB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0