DeepGraphLearning | GitHub owners

DeepGraphLearning/GearNet

GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)

Language: Python - Size: 512 KB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 291 - Forks: 28

DeepGraphLearning/ULTRA

A foundation model for knowledge graph reasoning

Language: Python - Size: 7.42 MB - Last synced at: 8 days ago - Pushed at: 5 months ago - Stars: 541 - Forks: 72

DeepGraphLearning/GearBind

Pretrainable geometric graph neural network for antibody affinity maturation

Language: Python - Size: 1.26 MB - Last synced at: 8 days ago - Pushed at: 3 months ago - Stars: 55 - Forks: 7

DeepGraphLearning/GMNN

Graph Markov Neural Networks

Language: Python - Size: 7.92 MB - Last synced at: 8 days ago - Pushed at: almost 5 years ago - Stars: 409 - Forks: 101

DeepGraphLearning/S3F

Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)

Language: Python - Size: 928 KB - Last synced at: 8 days ago - Pushed at: 7 months ago - Stars: 38 - Forks: 3

DeepGraphLearning/NBFNet

Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)

Language: Python - Size: 264 KB - Last synced at: 8 days ago - Pushed at: almost 2 years ago - Stars: 215 - Forks: 30

DeepGraphLearning/KnowledgeGraphEmbedding

Language: Python - Size: 31.4 MB - Last synced at: 8 days ago - Pushed at: over 1 year ago - Stars: 1,320 - Forks: 268

DeepGraphLearning/GraphAny

GraphAny: Fully-inductive Node Classification on Arbitrary Graphs

Language: Python - Size: 597 KB - Last synced at: 8 days ago - Pushed at: 5 months ago - Stars: 139 - Forks: 16

DeepGraphLearning/ESM-GearNet

ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)

Language: Python - Size: 1.56 MB - Last synced at: 8 days ago - Pushed at: over 1 year ago - Stars: 102 - Forks: 10

DeepGraphLearning/LiteratureDL4Graph

A comprehensive collection of recent papers on graph deep learning

Size: 187 KB - Last synced at: 8 days ago - Pushed at: over 4 years ago - Stars: 3,084 - Forks: 557

DeepGraphLearning/InductiveQE

Official implementation of Inductive Logical Query Answering in Knowledge Graphs (NeurIPS 2022)

Language: Python - Size: 3.06 MB - Last synced at: 8 days ago - Pushed at: over 2 years ago - Stars: 47 - Forks: 7

DeepGraphLearning/esm-s

Structure-Informed Protein Language Model

Language: Python - Size: 928 KB - Last synced at: 8 days ago - Pushed at: over 1 year ago - Stars: 34 - Forks: 5

DeepGraphLearning/RNNLogic

Language: C++ - Size: 96.9 MB - Last synced at: 8 days ago - Pushed at: over 2 years ago - Stars: 132 - Forks: 26

DeepGraphLearning/ContinuousGNN

Language: Python - Size: 140 KB - Last synced at: 8 days ago - Pushed at: over 3 years ago - Stars: 47 - Forks: 13

DeepGraphLearning/ConfGF

Implementation of Learning Gradient Fields for Molecular Conformation Generation (ICML 2021).

Language: Python - Size: 3.3 MB - Last synced at: 8 days ago - Pushed at: over 3 years ago - Stars: 166 - Forks: 37

DeepGraphLearning/torchdrug

A powerful and flexible machine learning platform for drug discovery

Language: Python - Size: 2.63 MB - Last synced at: 24 days ago - Pushed at: 10 months ago - Stars: 1,499 - Forks: 205

DeepGraphLearning/graphvite

GraphVite: A General and High-performance Graph Embedding System

Language: C++ - Size: 5.4 MB - Last synced at: 30 days ago - Pushed at: about 1 year ago - Stars: 1,252 - Forks: 154

DeepGraphLearning/pLogicNet

Language: Python - Size: 12.1 MB - Last synced at: 8 days ago - Pushed at: almost 5 years ago - Stars: 144 - Forks: 36

DeepGraphLearning/scCello

[NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model

Language: Python - Size: 22.7 MB - Last synced at: 8 days ago - Pushed at: 3 months ago - Stars: 15 - Forks: 2

DeepGraphLearning/ProtST

[ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts

Language: Python - Size: 551 KB - Last synced at: 8 days ago - Pushed at: over 1 year ago - Stars: 97 - Forks: 7

DeepGraphLearning/RecommenderSystems

Language: Python - Size: 48.8 MB - Last synced at: 29 days ago - Pushed at: about 5 years ago - Stars: 1,116 - Forks: 279

DeepGraphLearning/SiamDiff

Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)

Language: Python - Size: 1.86 MB - Last synced at: 8 days ago - Pushed at: almost 2 years ago - Stars: 40 - Forks: 6

DeepGraphLearning/AStarNet

Official implementation of A* Networks

Language: Python - Size: 30.6 MB - Last synced at: 8 days ago - Pushed at: almost 2 years ago - Stars: 143 - Forks: 17

DeepGraphLearning/GraphAF

Size: 1.95 KB - Last synced at: 8 days ago - Pushed at: almost 4 years ago - Stars: 54 - Forks: 5

DeepGraphLearning/GNN-QE

Official implementation of Graph Neural Network Query Executor (ICML 2022)

Language: Python - Size: 2.6 MB - Last synced at: 8 days ago - Pushed at: almost 2 years ago - Stars: 90 - Forks: 12

DeepGraphLearning/PEER_Benchmark

PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)

Language: Python - Size: 1.68 MB - Last synced at: 8 days ago - Pushed at: over 2 years ago - Stars: 89 - Forks: 11

DeepGraphLearning/GraphLoG

Implementation of Self-supervised Graph-level Representation Learning with Local and Global Structure (ICML 2021).

Language: Python - Size: 6.63 MB - Last synced at: 8 days ago - Pushed at: about 4 years ago - Stars: 80 - Forks: 17

DeepGraphLearning/DiffPack

Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing

Language: Python - Size: 10.4 MB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 84 - Forks: 7

DeepGraphLearning/ProteinTutorial_AAAI2025

https://deepgraphlearning.github.io/ProteinTutorial_AAAI2025/

Language: CSS - Size: 2.39 MB - Last synced at: 8 days ago - Pushed at: 4 months ago - Stars: 5 - Forks: 0

DeepGraphLearning/MATH60630A_2024A

Language: SCSS - Size: 151 MB - Last synced at: 8 days ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

DeepGraphLearning/ultra_torchdrug

A TorchDrug version of ULTRA for reproducibility

Language: Python - Size: 12.5 MB - Last synced at: 8 days ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 2

DeepGraphLearning/CGCF-ConfGen Fork of MinkaiXu/CGCF-ConfGen

:test_tube: Learning Neural Generative Dynamics for Molecular Conformation Generation (ICLR 2021)

Language: Python - Size: 1.43 MB - Last synced at: 6 months ago - Pushed at: almost 4 years ago - Stars: 22 - Forks: 5

DeepGraphLearning/SPN

Language: Python - Size: 18.7 MB - Last synced at: 8 days ago - Pushed at: almost 3 years ago - Stars: 29 - Forks: 2

DeepGraphLearning/LINE Fork of tangjianpku/LINE

LINE: Large-scale information network embedding

Language: C++ - Size: 103 KB - Last synced at: 6 months ago - Pushed at: over 7 years ago - Stars: 6 - Forks: 2

GitHub / DeepGraphLearning 43 Repositories

DeepGraphLearning/CGCF-ConfGen Fork of MinkaiXu/CGCF-ConfGen

DeepGraphLearning/LINE Fork of tangjianpku/LINE

DeepGraphLearning/ConfVAE-ICML21 Fork of MinkaiXu/ConfVAE-ICML21

DeepGraphLearning/Graph-Reading-Group Fork of shagunsodhani/Graph-Reading-Group