DeepRank/deeprank2

An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.

Language: Python - Size: 107 MB - Last synced at: 8 days ago - Pushed at: 5 months ago - Stars: 50 - Forks: 11

DeepRank/PSSMGen

Generates consistent PSSM and/or PDB files for protein-protein complexes

Language: Python - Size: 737 KB - Last synced at: 27 days ago - Pushed at: almost 3 years ago - Stars: 20 - Forks: 5

DeepRank/Deeprank-GNN 📦

Graph Network for protein-protein interface

Language: Python - Size: 96 MB - Last synced at: 26 days ago - Pushed at: about 1 year ago - Stars: 120 - Forks: 33

DeepRank/DeepRank-GNN-esm

Graph Network for protein-protein interface including language model features

Language: Python - Size: 722 MB - Last synced at: 29 days ago - Pushed at: about 1 year ago - Stars: 30 - Forks: 9

DeepRank/iScore

iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines

Language: Python - Size: 20.7 MB - Last synced at: 12 days ago - Pushed at: almost 3 years ago - Stars: 30 - Forks: 10

DeepRank/deeprank 📦

This repository has been integrated in https://github.com/DeepRank/deeprank2

Language: Python - Size: 105 MB - Last synced at: 23 days ago - Pushed at: over 1 year ago - Stars: 144 - Forks: 25

DeepRank/3D-Vac

Personalized cancer vaccine design through 3D modelling boosted geometric learning.

Language: Jupyter Notebook - Size: 50.2 MB - Last synced at: about 2 months ago - Pushed at: 5 months ago - Stars: 3 - Forks: 0

DeepRank/deeprank2_test_release_2 Fork of DeepRank/deeprank2

Fork for testing automated release workflow

Language: Python - Size: 107 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

DeepRank/pypdb Fork of williamgilpin/pypdb

A Python API for the RCSB Protein Data Bank (PDB)

Language: Python - Size: 362 KB - Last synced at: about 1 year ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0

DeepRank/scrapePDB

Language: HTML - Size: 26.9 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

DeepRank/pdb2sql_benchmark

Language: Python - Size: 77.1 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

DeepRank/haddock-tools Fork of haddocking/haddock-tools

Set of useful HADDOCK utility scripts

Size: 206 KB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

DeepRank/PoNDeR

PointNet for Deep Rank: protein-protein interaction scoring using neural networks

Language: Python - Size: 383 KB - Last synced at: about 1 year ago - Pushed at: almost 5 years ago - Stars: 9 - Forks: 1

DeepRank/DeepXplorer

Data browser for HDF5 files generated by DeepRank

Language: Python - Size: 10.3 MB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 3 - Forks: 0

DeepRank/graphRank

graph approach of ranking

Language: Python - Size: 43 KB - Last synced at: about 1 year ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 1

DeepRank/pdbprep

preprocess PDB files for deeprankcore

Language: Python - Size: 79.1 KB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 1

DeepRank/staged-recipes Fork of conda-forge/staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

Language: Python - Size: 122 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

DeepRank/pdb2sql

Fast and versatile biomolecular structure PDB file parser using SQL queries

Language: Python - Size: 2.76 MB - Last synced at: 7 days ago - Pushed at: about 2 years ago - Stars: 24 - Forks: 11

DeepRank/DeepRank-Mut 📦

Deep learning framework to predict functional effects of missense variants in human

Language: Python - Size: 187 MB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

DeepRank/h5xplorer

A customizable HDF5 browser with iPython console embbeded

Language: Python - Size: 84 MB - Last synced at: 9 days ago - Pushed at: 8 months ago - Stars: 5 - Forks: 2