GoekeLab/bambu-singlecell-spatial

Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu

Language: Nextflow - Size: 20 MB - Last synced: 3 days ago - Pushed: 4 days ago - Stars: 1 - Forks: 0

GoekeLab/awesome-nanopore

A curated list of awesome nanopore analysis tools.

Size: 112 KB - Last synced: 4 days ago - Pushed: 6 months ago - Stars: 216 - Forks: 40

GoekeLab/m6anet

Detection of m6A from direct RNA-Seq data

Language: Python - Size: 21.1 MB - Last synced: 18 days ago - Pushed: 6 months ago - Stars: 97 - Forks: 16

GoekeLab/sg-nex-data

Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

Language: Jupyter Notebook - Size: 2.36 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 87 - Forks: 23

GoekeLab/proActiv

Estimation of Promoter Activity from RNA-Seq data

Language: R - Size: 195 MB - Last synced: 11 days ago - Pushed: over 2 years ago - Stars: 44 - Forks: 12

GoekeLab/xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing

Language: Python - Size: 4.96 MB - Last synced: 18 days ago - Pushed: about 1 month ago - Stars: 127 - Forks: 22

GoekeLab/bambu

Reference-guided transcript discovery and quantification for long read RNA-Seq data

Language: R - Size: 637 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 118 - Forks: 19

GoekeLab/bioinformatics-workflows

minimal example implementations for bioinformatics workflow managers

Language: Python - Size: 9.96 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 226 - Forks: 42

GoekeLab/proactivWorkflow

proActiv workflow: Identifying active and alternative promoters from RNA-Seq data

Size: 84 KB - Last synced: 11 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 1

GoekeLab/NanoporeRNASeq

Nanopore RNASeq data

Language: R - Size: 107 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 4 - Forks: 1

GoekeLab/containers Fork of BioContainers/containers

Bioinformatics containers

Size: 8.34 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0

GoekeLab/nanoseq Fork of nf-core/nanoseq

Nanopore demultiplexing, QC and alignment pipeline

Language: Nextflow - Size: 5.44 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0

GoekeLab/ICGC_alternative_promoters

A pipeline for alternative promoter analysis.

Language: Nextflow - Size: 18.6 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

GoekeLab/ncNAT_promoter_switch_code

Language: R - Size: 22.5 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

GoekeLab/modules Fork of nf-core/modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

Size: 90.7 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

GoekeLab/nanorna-bam Fork of cying111/nanorna-bam

Downstream analysis of Nanopore RNA data - transcriptome reconstruction and feature counts (under development)

Language: Nextflow - Size: 132 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0