GooglingTheCancerGenome/sv-channels

Deep learning-based structural variant filtering method

Language: Python - Size: 449 MB - Last synced at: 5 days ago - Pushed at: almost 2 years ago - Stars: 39 - Forks: 6

GooglingTheCancerGenome/sv-callers

Snakemake-based workflow for detecting structural variants in genomic data

Language: Python - Size: 210 MB - Last synced at: 4 days ago - Pushed at: 7 months ago - Stars: 80 - Forks: 36

GooglingTheCancerGenome/sv-gen

Snakemake-based workflow for generating artificial genomes with structural variants

Language: Python - Size: 22.5 MB - Last synced at: 4 days ago - Pushed at: 7 months ago - Stars: 7 - Forks: 1

GooglingTheCancerGenome/sv-report

Size: 8.79 KB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

GooglingTheCancerGenome/docker-images

Docker images for CI testing

Language: Dockerfile - Size: 53.7 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

GooglingTheCancerGenome/notebooks

This repo mirrors the Jupyter Notebooks archived at Zenodo

Language: Jupyter Notebook - Size: 92.8 KB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 0

GooglingTheCancerGenome/breakpoint-pairs

Minor research internship of Sarah Mehrem.

Language: Python - Size: 4.54 MB - Last synced at: over 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

GooglingTheCancerGenome/bamsurgeon Fork of adamewing/bamsurgeon

tools for adding mutations to existing .bam files, used for testing mutation callers

Language: Python - Size: 229 MB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

GooglingTheCancerGenome/hsv-ld

Linked Data Platform for Structural Variants in Human Cancer Genomes

Language: Shell - Size: 11.7 KB - Last synced at: over 2 years ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 2

GooglingTheCancerGenome/ga-integr8

Genome Annotation Data Integration

Language: Python - Size: 162 MB - Last synced at: over 2 years ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0