GitHub / Grice-Lab 1 Repository
Elizabeth Grice Research Lab at the University of Pennsylvania
Grice-Lab/HmmUFOtu
An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing
Language: C++ - Size: 53.3 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 11 - Forks: 9
Grice-Lab/IowaWound
Iowa Wound Pain analyses 2020
Language: R - Size: 67.2 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
Grice-Lab/Staphyloxanthin
Code repository for Staphyloxanthin paper
Language: R - Size: 270 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
Grice-Lab/DFUStrainsWGS
This repo contains scripts related to the whole genome sequencing of >200 isolates of S. aureus from people with diabetic foot ulcers (DFU100 project)
Language: Shell - Size: 731 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
Grice-Lab/AlignerBoost
AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality framework
Language: Java - Size: 233 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 11 - Forks: 1
Grice-Lab/MSGseqTK
A Metagenomics Shotgun Sequencing Toolkit for NGS read mapping and cleaning based on a novel incremental and parallel FMD-index algorithm
Language: C++ - Size: 3.81 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0