Hekstra-Lab/integrator

Proof of concept profile fitting and integration with neural nets

Language: Python - Size: 42.2 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 3 - Forks: 0

Hekstra-Lab/SFcalculator

Size: 2.7 MB - Last synced at: 19 days ago - Pushed at: 3 months ago - Stars: 19 - Forks: 1

Hekstra-Lab/mdtools

Tools for running MD simulations in OpenMM

Language: Python - Size: 269 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 6 - Forks: 3

Hekstra-Lab/SFcalculator_torch

Differentiable pipeline connecting protein atomic models and crystallography structure factors

Language: Python - Size: 1.64 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 4 - Forks: 3

Hekstra-Lab/regroup

Determine new space groups for analyzing pump-probe crystallography experiments

Language: Python - Size: 55.7 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

Hekstra-Lab/SFcalculator_tf

Language: Python - Size: 1.29 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

Hekstra-Lab/dw-examples

Examples of merging crystallographic intensities with a bivariate prior

Language: Jupyter Notebook - Size: 123 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

Hekstra-Lab/raman-analysis

Spontaneous Raman analysis library

Language: Python - Size: 27.3 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 1

Hekstra-Lab/colav

Calculate protein structural representations (dihedral angles, CA pairwise distances, and strain analysis) for downstream analysis (e.g., PCA, t-SNE, or UMAP).

Language: Jupyter Notebook - Size: 373 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 4 - Forks: 1

Hekstra-Lab/dw

jupyter notebooks exploring the double-Wilson model

Language: Jupyter Notebook - Size: 274 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1

Hekstra-Lab/room-of-requirement

Useful Lab Utilities

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Hekstra-Lab/Devices_Optics

Code to collect and analyze data using the spectroscopic setup & data collected

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Hekstra-Lab/phase-retrieval

A small library implementing phase retrieval algorithms for 2D images.

Language: Jupyter Notebook - Size: 1.4 GB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 21 - Forks: 6

Hekstra-Lab/tape Fork of songlab-cal/tape

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

Language: Python - Size: 807 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Hekstra-Lab/marccd

Read, write, and manipulate diffraction images that use the MarCCD format

Language: Python - Size: 13.7 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

Hekstra-Lab/cog

Wrapper for Precognition to simplify Laue data reduction

Language: Python - Size: 6.97 MB - Last synced at: 4 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

Hekstra-Lab/scramble

A tool for disambiguating serial laue data

Language: Python - Size: 43 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Hekstra-Lab/scientific-python-bootcamp

Notebooks from a three day introduction to scientific computing in python at Harvard University.

Language: Jupyter Notebook - Size: 100 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 2

Hekstra-Lab/hadamuxer

Demultiplex Hadamard-encoded diffraction images.

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Hekstra-Lab/spectra-baseline

Fast implementations of baseline subtraction for raman spectra

Language: Python - Size: 18.6 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

Hekstra-Lab/russell-thesis

Jupyter notebooks that were used for data analysis and figure making for John Russell's Ph.D. Thesis.

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Hekstra-Lab/EF-X-crystal-MD

Setup and analysis of MD simulations mimicking the application of an external electric field to a protein crystal.

Language: Jupyter Notebook - Size: 16.4 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 1

Hekstra-Lab/SFcalculator_jax

Language: Python - Size: 1.29 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

Hekstra-Lab/napari-labeller

Language: Python - Size: 35.2 KB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 2 - Forks: 0

Hekstra-Lab/envs Fork of ianhi/envs

conda environment repository

Language: Python - Size: 45.9 KB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

Hekstra-Lab/laue-index-assigner

A robust algorithm for assigning miller indices to Laue data from approximate indexing solutions.

Language: Python - Size: 18.9 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 1

Hekstra-Lab/disco

Generate feasible Laue Bragg spots from randomly oriented crystals

Language: Python - Size: 2.79 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

Hekstra-Lab/fasrc-ood-jupyter

OnDemand app for serving Jupyter notebooks out of your local path

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Hekstra-Lab/yeast-mrcnn

Another implementation of mask-rcnn for detecting budding yeast cells in microscopy images

Language: Python - Size: 29.3 KB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 0 - Forks: 0

Hekstra-Lab/microutil

Python utils for working microscopy datasets

Language: Python - Size: 324 KB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 2 - Forks: 2

Hekstra-Lab/fast-overlap

meep meep

Language: Python - Size: 281 KB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 0 - Forks: 2

Hekstra-Lab/hekstra-lab.github.io

Essentially a custom 404 in case anyone tries this URL

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Hekstra-Lab/np-bragg

A very simplistic x-ray diffraction simulator for teaching purposes.

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Hekstra-Lab/UVScale

Language: Python - Size: 640 KB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0

Hekstra-Lab/cartographer

Approximate bayesian inference of fourier difference map coefficients

Language: Python - Size: 14.1 MB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

Hekstra-Lab/landfill

Machine learning tools to estimate spatiotemporally resolved background intentensities

Language: Python - Size: 25.4 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

Hekstra-Lab/nesm-python

Notebooks for the python workshop at the New England Society for Microscopy Spring 2021 Meeting

Language: Jupyter Notebook - Size: 14.8 MB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

Hekstra-Lab/stills2mtz

Example using CCTBX to convert DIALS output to mtz with Ewald offsets.

Size: 267 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

Hekstra-Lab/laser-pointer

Aiming lasers for microscopy

Language: Python - Size: 16.5 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

Hekstra-Lab/df-crystal

Pandas dataframes extended for crystallography computing operations.

Language: Python - Size: 218 KB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

Hekstra-Lab/east

Scripts for Finding Crystal Orientation

Size: 34.7 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 0

Hekstra-Lab/north

Figure out which way's up from x-ray test shots.

Language: Python - Size: 8.54 MB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

Hekstra-Lab/AM50-Student-2019

Course materials for Applied Math 50 offered Spring 2019.

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Hekstra-Lab/ccbxray

Notes and Tools for Analyzing MX Datasets from the CCB X-Ray Facility

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