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GitHub / Hekstra-Lab 18 repositories
GitHub of the Hekstra Lab. Note: Careless and Reciprocal Spaceship have migrated to https://github.com/rs-station
Hekstra-Lab/SFcalculator_torch
Differentiable pipeline connecting protein atomic models and crystallography structure factors
Language: Python - Size: 1.69 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 1 - Forks: 2
Hekstra-Lab/dw
jupyter notebooks exploring the double-Wilson model
Language: Jupyter Notebook - Size: 274 MB - Last synced: 23 days ago - Pushed: 24 days ago - Stars: 0 - Forks: 0
Hekstra-Lab/dw-examples
Examples of merging crystallographic intensities with a bivariate prior
Language: Jupyter Notebook - Size: 123 MB - Last synced: 23 days ago - Pushed: 24 days ago - Stars: 0 - Forks: 0
Hekstra-Lab/room-of-requirement
Useful Lab Utilities
Language: Jupyter Notebook - Size: 12.8 MB - Last synced: 27 days ago - Pushed: 27 days ago - Stars: 0 - Forks: 1
Hekstra-Lab/phase-retrieval
A small library implementing phase retrieval algorithms for 2D images.
Language: Jupyter Notebook - Size: 1.4 GB - Last synced: about 1 month ago - Pushed: almost 4 years ago - Stars: 21 - Forks: 6
Hekstra-Lab/raman-analysis
Spontaneous Raman analysis library
Language: Python - Size: 38.1 KB - Last synced: 19 days ago - Pushed: 19 days ago - Stars: 1 - Forks: 1
Hekstra-Lab/regroup
Determine new space groups for analyzing pump-probe crystallography experiments
Language: Python - Size: 53.7 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0
Hekstra-Lab/tape Fork of songlab-cal/tape
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
Language: Python - Size: 807 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0
Hekstra-Lab/marccd
Read, write, and manipulate diffraction images that use the MarCCD format
Language: Python - Size: 13.7 MB - Last synced: 7 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0
Hekstra-Lab/SFcalculator
Size: 2.69 MB - Last synced: 5 months ago - Pushed: 8 months ago - Stars: 2 - Forks: 0
Hekstra-Lab/cog
Wrapper for Precognition to simplify Laue data reduction
Language: Python - Size: 6.96 MB - Last synced: 8 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0
Hekstra-Lab/scramble
A tool for disambiguating serial laue data
Language: Python - Size: 43 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0
Hekstra-Lab/mdtools
Tools for running MD simulations in OpenMM
Language: Python - Size: 253 KB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 5 - Forks: 3
Hekstra-Lab/scientific-python-bootcamp
Notebooks from a three day introduction to scientific computing in python at Harvard University.
Language: Jupyter Notebook - Size: 100 MB - Last synced: 9 months ago - Pushed: over 3 years ago - Stars: 3 - Forks: 2
Hekstra-Lab/hadamuxer
Demultiplex Hadamard-encoded diffraction images.
Language: Python - Size: 15.6 KB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0
Hekstra-Lab/spectra-baseline
Fast implementations of baseline subtraction for raman spectra
Language: Python - Size: 18.6 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0
Hekstra-Lab/russell-thesis
Jupyter notebooks that were used for data analysis and figure making for John Russell's Ph.D. Thesis.
Language: Jupyter Notebook - Size: 6.61 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0
Hekstra-Lab/EF-X-crystal-MD
Setup and analysis of MD simulations mimicking the application of an external electric field to a protein crystal.
Language: Jupyter Notebook - Size: 16.4 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 1
Hekstra-Lab/SFcalculator_tf
Language: Python - Size: 1.28 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
Hekstra-Lab/SFcalculator_jax
Language: Python - Size: 1.29 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
Hekstra-Lab/napari-labeller
Language: Python - Size: 35.2 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 2 - Forks: 0
Hekstra-Lab/envs Fork of ianhi/envs
conda environment repository
Language: Python - Size: 45.9 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0
Hekstra-Lab/laue-index-assigner
A robust algorithm for assigning miller indices to Laue data from approximate indexing solutions.
Language: Python - Size: 18.9 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 1
Hekstra-Lab/disco
Generate feasible Laue Bragg spots from randomly oriented crystals
Language: Python - Size: 2.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
Hekstra-Lab/fasrc-ood-jupyter
OnDemand app for serving Jupyter notebooks out of your local path
Language: HTML - Size: 50.8 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 1
Hekstra-Lab/yeast-mrcnn
Another implementation of mask-rcnn for detecting budding yeast cells in microscopy images
Language: Python - Size: 31.3 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0
Hekstra-Lab/microutil
Python utils for working microscopy datasets
Language: Python - Size: 322 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 2 - Forks: 2
Hekstra-Lab/fast-overlap
meep meep
Language: Python - Size: 274 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 2
Hekstra-Lab/hekstra-lab.github.io
Essentially a custom 404 in case anyone tries this URL
Language: HTML - Size: 66.4 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
Hekstra-Lab/np-bragg
A very simplistic x-ray diffraction simulator for teaching purposes.
Language: Jupyter Notebook - Size: 660 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0
Hekstra-Lab/UVScale
Language: Python - Size: 640 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0
Hekstra-Lab/cartographer
Approximate bayesian inference of fourier difference map coefficients
Language: Python - Size: 14.1 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0
Hekstra-Lab/landfill
Machine learning tools to estimate spatiotemporally resolved background intentensities
Language: Python - Size: 25.4 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0
Hekstra-Lab/nesm-python
Notebooks for the python workshop at the New England Society for Microscopy Spring 2021 Meeting
Language: Jupyter Notebook - Size: 14.8 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0
Hekstra-Lab/stills2mtz
Example using CCTBX to convert DIALS output to mtz with Ewald offsets.
Size: 267 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0
Hekstra-Lab/laser-pointer
Aiming lasers for microscopy
Language: Python - Size: 16.5 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0
Hekstra-Lab/df-crystal
Pandas dataframes extended for crystallography computing operations.
Language: Python - Size: 218 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0
Hekstra-Lab/east
Scripts for Finding Crystal Orientation
Size: 34.7 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0
Hekstra-Lab/north
Figure out which way's up from x-ray test shots.
Language: Python - Size: 8.54 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0
Hekstra-Lab/AM50-Student-2019
Course materials for Applied Math 50 offered Spring 2019.
Language: Jupyter Notebook - Size: 49.5 MB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 3
Hekstra-Lab/ccbxray
Notes and Tools for Analyzing MX Datasets from the CCB X-Ray Facility
Language: Python - Size: 12.7 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 2