Imageomics/bioclip

This is the repository for the BioCLIP model and the TreeOfLife-10M dataset [CVPR'24 Oral, Best Student Paper].

Language: Python - Size: 28.9 MB - Last synced at: 4 days ago - Pushed at: 3 months ago - Stars: 201 - Forks: 20

Imageomics/pybioclip

Python package that simplifies using the BioCLIP foundation model.

Language: Python - Size: 3.41 MB - Last synced at: 5 days ago - Pushed at: 14 days ago - Stars: 30 - Forks: 6

Imageomics/EcoPalette

Integration of environmental data into species images to assess model accuracy importance.

Language: R - Size: 8.79 KB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 0 - Forks: 0

Imageomics/kabr-tools

Tools for working with data for annotating animal behavior. These were specifically designed during construction of the KABR dataset.

Language: Python - Size: 243 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 4 - Forks: 0

Imageomics/bioclip-vector-db

Vector database training data retrieval of BioCLIP-embedded nearest neighbors.

Language: Jupyter Notebook - Size: 20.5 KB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 0 - Forks: 1

Imageomics/data-workshop-AH-2024

Repository for Mastering Data Management Workshop at the All Hands 2024.

Language: Jupyter Notebook - Size: 2.13 MB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 2 - Forks: 2

Imageomics/distributed-downloader

MPI-based distributed downloading tool for retrieving data from diverse domains.

Language: Python - Size: 282 KB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 2 - Forks: 0

Imageomics/Imageomics-guide

Imageomics-focused guide to collaborative work, including GitHub and Hugging Face workflows.

Language: Python - Size: 6.89 MB - Last synced at: 3 days ago - Pushed at: 27 days ago - Stars: 3 - Forks: 0

Imageomics/Finer-CAM

This is an official implementation for Finer-CAM: Spotting the Difference Reveals Finer Details for Visual Explanation. [CVPR'25]

Language: Jupyter Notebook - Size: 5.52 MB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 31 - Forks: 3

Imageomics/cautious-robot

Simple images from CSV downloader that runs and records checksums on downloaded image folder.

Language: Python - Size: 2.67 MB - Last synced at: 3 days ago - Pushed at: about 2 months ago - Stars: 3 - Forks: 0

Imageomics/sum-buddy

Generate and save checksums for all (or certain) contents of given directory.

Language: Python - Size: 44.9 KB - Last synced at: 3 days ago - Pushed at: about 2 months ago - Stars: 3 - Forks: 0

Imageomics/dna-trait-analysis

Goal: to find associations between dna data and visual traits.

Language: Jupyter Notebook - Size: 54.1 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 4 - Forks: 0

Imageomics/wildwing

Autonomous UAS Software for In Situ Imageomics Missions

Language: HTML - Size: 26.3 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0

Imageomics/INTR

This is an official implementation for [ICLR'24] INTR: Interpretable Transformer for Fine-grained Image Classification.

Language: Jupyter Notebook - Size: 2.24 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 49 - Forks: 4

Imageomics/SST

Official repo for paper "Static Segmentation by Tracking: A Frustratingly Label-Efficient Approach to Fine-Grained Segmentation"

Language: Python - Size: 46.3 MB - Last synced at: about 1 month ago - Pushed at: about 2 months ago - Stars: 7 - Forks: 1

Imageomics/Prompt_CAM

This is an official implementation for PROMPT-CAM: A Simpler Interpretable Transformer for Fine-Grained Analysis (CVPR'25)

Language: Jupyter Notebook - Size: 896 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 3 - Forks: 0

Imageomics/2018-NEON-beetles-processing

Processing code and exploratory notebooks for BeetlePalooza dataset (2018 NEON Ethanol-preserved Ground Beetles).

Language: Jupyter Notebook - Size: 63.6 MB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 0 - Forks: 2

Imageomics/wing-segmentation

Butterfly wing segmentation

Language: Jupyter Notebook - Size: 4.41 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 1 - Forks: 1

Imageomics/HComPNet

Code repository for HComP-Net (ICLR'25)

Language: Python - Size: 303 MB - Last synced at: about 1 month ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 1

Imageomics/HDR-anomaly-challenge

Repository for Imageomics' CodaBench challenge as part of the HDR Anomaly ML Challenge.

Language: Python - Size: 1.19 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 4 - Forks: 1

Imageomics/Andromeda

A website that enables users to explore high-dimensional image data

Language: Jupyter Notebook - Size: 134 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 2 - Forks: 1

Imageomics/phylo-diffusion

Code Repository for Phylo-Diffusion. Accepted at ECCV 2024

Language: Python - Size: 1.71 MB - Last synced at: about 1 month ago - Pushed at: 4 months ago - Stars: 4 - Forks: 1

Imageomics/2025-02-11-osu-online

Software Carpentry Workshop on Version Control with Git and R for Scientific Reproducibility

Language: HTML - Size: 2.1 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

Imageomics/TraitBlender

Blender addon for simulating raw datasets under known evolutionary models

Language: Python - Size: 536 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 1

Imageomics/sdm-beetlepalooza

Language: Jupyter Notebook - Size: 6.84 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

Imageomics/pyMorphoSource

Python package to interact with morphosource

Language: Python - Size: 57.6 KB - Last synced at: 11 days ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

Imageomics/animal-id

Currently add viewpoint classifier only, but will update entire pipeline

Language: Python - Size: 122 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

Imageomics/NEON_beetles_masks

Language: Python - Size: 753 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

Imageomics/char-sim

Pipeline to create model for comparing character state descriptions including ontology similarity

Language: Python - Size: 22.5 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 1

Imageomics/snakemake-workshop

Lesson on creating a Snakemake Workflow with an Imageomics emphasis

Size: 9.51 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

Imageomics/Fish-Vista Fork of sajeedmehrab/Fish-Vista

Fish-Vista: A Multi-Purpose Dataset for Understanding \& Identification of Traits from Images

Language: Jupyter Notebook - Size: 7.8 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 3 - Forks: 0

Imageomics/VLM4Bio

Code for VLM4Bio, a benchmark dataset of scientific question-answer pairs used to evaluate pretrained VLMs for trait discovery from biological images.

Language: Python - Size: 2.51 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 2 - Forks: 2

Imageomics/HDR-anomaly-challenge-sample

Sample Submission Repository for the 2024 HDR Anomaly Challenge

Language: Python - Size: 6.56 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0

Imageomics/color-calibration

Provides python code for calibrating image colors containing color cards

Language: Python - Size: 19.5 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

Imageomics/BeetlePalooza-2024

BeetlePalooza collaborative hands-on development event to be held at OSU August 12-15

Language: Jupyter Notebook - Size: 12.4 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 3 - Forks: 0

Imageomics/2024-08-16-osu-online

Software Carpentry Workshop on Version Control with Git and R for Scientific Reproducibility

Language: HTML - Size: 2.13 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

Imageomics/LatLonCover

Land usage descriptions for neighborhoods around given lat/long

Language: Jupyter Notebook - Size: 2.77 MB - Last synced at: 10 months ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 0

Imageomics/dashboard-prototype

Prototype data dashboard for Imageomics Data

Language: Python - Size: 75.3 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 2

Imageomics/parquet-cli

An Apptainer image for more convenient use of Parquet files at the command line.

Size: 3.91 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

Imageomics/marmosets-hybrid-classification

Purpose: To train a classification model to distinguish hybrid marmosets from parent species.

Language: Python - Size: 54.7 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Imageomics/Palette_Butterfly

Provide tools to identify automitacally the color palette contained in the image

Language: Jupyter Notebook - Size: 61.3 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

Imageomics/open_clip Fork of mlfoundations/open_clip

An open source implementation of CLIP.

Language: Python - Size: 10.3 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1

Imageomics/drawers2data

This project is an AI/ML computer vision pipeline which automatically segments images of whole museum cabinet drawers into annotated images of individual lots and specimens that are ready for phenotypic analysis.

Language: Jupyter Notebook - Size: 15.1 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Imageomics/plazi-multipanel-figures

Subdivide multipanel figures and complex captions to individual image / caption pairs

Size: 2.56 MB - Last synced at: 6 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Imageomics/telemetry-dashboard Fork of Imageomics/dashboard-prototype

Dashboard for Analyzing Telemetry Data

Size: 74.5 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Imageomics/Image-Datapalooza-2023

Repository for the Image Datapalooza 2023 event held at OSU in August 2023.

Size: 9.41 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

Imageomics/recolorize Fork of hiweller/recolorize

Simplifying and remapping image colors.

Language: R - Size: 13.5 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

Imageomics/Butterfly-mimicry

Exploring the influence of acuity on classification accuracy and mimicry in Heliconius butterflies.

Language: Jupyter Notebook - Size: 10.3 MB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

Imageomics/dataverse-access

Dataverse command line tool

Language: Python - Size: 30.3 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 1

Imageomics/slicerMorph_JSON_generator

Tool to generate a JSON for use with SlicerMorph from a CSV of a particular format.

Language: Jupyter Notebook - Size: 33.2 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Imageomics/ml_toolbox

Language: Python - Size: 13.7 KB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

Imageomics/.github

Size: 27.3 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1

Imageomics/ai-explainability

Language: Python - Size: 14.8 MB - Last synced at: 9 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 1

Imageomics/docker-workshop Fork of carpentries-incubator/docker-introduction

Lesson on using and creating containers with Docker with an Imageomics emphasis

Language: Python - Size: 2.99 MB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

Imageomics/WingSeg Fork of agporto/WingSeg

Size: 25.6 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

Imageomics/2023-03-22-imageomics

Website for the Teaching Workshop to be held at the March 2023 Imageomics All-Hands meeting

Language: HTML - Size: 2.18 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

Imageomics/Publications

Publications from Imageomics folks

Language: TeX - Size: 26.4 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1