LREN-CHUV/woken

An orchestration platform for Docker containers running data mining algorithms

Language: Scala - Size: 8.26 MB - Last synced at: about 13 hours ago - Pushed at: about 1 year ago - Stars: 11 - Forks: 9

LREN-CHUV/docker-alembic

Docker image for Alembic database migrations

Language: Shell - Size: 31.3 KB - Last synced at: 4 months ago - Pushed at: over 6 years ago - Stars: 5 - Forks: 2

LREN-CHUV/ansible-airflow

Ansible role for the installation of Apache Airflow

Language: Python - Size: 138 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 18 - Forks: 7

LREN-CHUV/MLM

Mulivariate analysis for Neuroimaging data.

Language: HTML - Size: 105 KB - Last synced at: 6 months ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 0

LREN-CHUV/MSPM

Mass Multivariate methods for neurimaging data

Language: MATLAB - Size: 1.11 MB - Last synced at: 6 months ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 1

LREN-CHUV/docker-cbrain

Docker images for CBrain

Language: Shell - Size: 61.5 KB - Last synced at: 6 months ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 3

LREN-CHUV/woken-validation

Cross-validation module for Woken, using Spark and PFA

Language: Scala - Size: 350 KB - Last synced at: 4 months ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 7

LREN-CHUV/mri-preprocessing-pipeline-light

Light version of mri-preprocessing-pipeline, for installation

Language: Matlab - Size: 34.9 MB - Last synced at: 3 months ago - Pushed at: over 8 years ago - Stars: 1 - Forks: 0

LREN-CHUV/data-tracking

This project contains scripts to extract metadata from DICOM files, NIFTI files and spreadsheets, and import them into a database.

Language: Python - Size: 1.36 MB - Last synced at: 2 months ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 2

LREN-CHUV/docker-pgtap Fork of walm/docker-pgtap

Postgres pgTap test runner in docker

Language: Shell - Size: 70.3 KB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 14 - Forks: 6

LREN-CHUV/data-factory-airflow-dags

DAGs adapting the MRI preprocessing pipeline to Airflow

Language: Python - Size: 403 KB - Last synced at: 2 months ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 1

LREN-CHUV/mri-preprocessing-pipeline

MRI preprocessing pipeline

Language: Matlab - Size: 120 MB - Last synced at: 3 months ago - Pushed at: over 7 years ago - Stars: 3 - Forks: 5

LREN-CHUV/portal-backend

Backend for the MIP portal

Language: Java - Size: 51.3 MB - Last synced at: 15 days ago - Pushed at: 16 days ago - Stars: 2 - Forks: 1

LREN-CHUV/airflow-imaging-plugins

Set of plugins helping to work with imaging data in Airflow.

Language: Python - Size: 257 KB - Last synced at: 11 days ago - Pushed at: about 1 year ago - Stars: 15 - Forks: 2

LREN-CHUV/i2b2-import

This library provides functions to import data into an I2B2 DB schema

Language: Python - Size: 254 KB - Last synced at: about 24 hours ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 2

LREN-CHUV/Neuro_Atlasing

Matlab script for the segmentation of individual T1w images into brain regions defined by SPM12 Neuromephometric atlas.

Language: MATLAB - Size: 1.95 KB - Last synced at: about 1 month ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 1

LREN-CHUV/mip-cde-meta-db-setup

Meta DB setup based on our selection of common variables (MIP CDE)

Language: Shell - Size: 103 KB - Last synced at: 6 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 2

LREN-CHUV/BIDS_Manager Fork of Dynamap/BIDS_Manager

BIDS Manage is a software aiming at importing and organising data in BIDS standard

Language: Python - Size: 65 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

LREN-CHUV/dkmeans Fork of Marigold/dkmeans

Decentralized K-Means, as a Step Towards Decentralized dFNC

Language: Python - Size: 179 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

LREN-CHUV/mri-parallel-nmm-pipeline

Wrapper to run the SPM12 neuromorphometric pipeline in parallel over multiple CPU cores

Language: Python - Size: 10.7 KB - Last synced at: 6 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 1

LREN-CHUV/python-base-docker-images

Collection of Docker images for Python, including the base images created for the Algorithm Factory / Woken

Language: Python - Size: 329 KB - Last synced at: 7 days ago - Pushed at: 12 months ago - Stars: 4 - Forks: 5

LREN-CHUV/pfa-validator

Validation of the PFA model and its predictive algorithm

Language: Python - Size: 80.1 KB - Last synced at: 22 days ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 2

LREN-CHUV/portal-frontend

Frontend for the MIP portal

Language: TypeScript - Size: 28.7 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 1

LREN-CHUV/nmm-pipeline-output-merge

Merge individual MIP formatted output from the NMM pipeline into one single CSV file.

Language: Python - Size: 15.6 KB - Last synced at: 6 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1

LREN-CHUV/nmm-pipeline-nifti-organizer

This tool is meant to help data owners to organise their MRI data in such way that it can be pre-processed by the MIP SPM12 neuromorphometric pipeline as wrapped for the MIP.

Language: Python - Size: 3.91 KB - Last synced at: 6 months ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 1

LREN-CHUV/mip-microservices-infrastructure

Generic version of the scripts used to deploy the Medical Informatics Platform

Language: Shell - Size: 7.42 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 9

LREN-CHUV/web-analytics-demo

Launch the MIP web-analytics components using docker-compose

Language: Shell - Size: 117 KB - Last synced at: 6 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

LREN-CHUV/woken-messages

Shared library containing the API and messages used in Woken applications

Language: Scala - Size: 403 KB - Last synced at: 4 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 3

LREN-CHUV/ansible-marathon Fork of ludovicc/ansible-marathon

Ansible role installing Marathon

Language: Dockerfile - Size: 78.1 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 2

LREN-CHUV/docker-create-databases

Create databases in a Postgres server. Useful for testing with docker-compose.

Language: Shell - Size: 23.4 KB - Last synced at: about 1 month ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

LREN-CHUV/docker-airflow-test-py34

Airflow with nosetests running on Python 3.4

Language: Shell - Size: 21.5 KB - Last synced at: 14 days ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

LREN-CHUV/docker-airflow-test-py35

Airflow with nosetests running on Python 3.5

Language: Shell - Size: 22.5 KB - Last synced at: 6 months ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 1

LREN-CHUV/docker-compose-for-ci

Build environment for our projects on CircleCI

Language: Shell - Size: 20.5 KB - Last synced at: 6 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

LREN-CHUV/ubuntu-for-ci

Base Ubuntu image to use when building and testing projects in continuous integration

Language: Shell - Size: 9.77 KB - Last synced at: 6 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

LREN-CHUV/docker-flyway Fork of shouldbee/docker-flyway

Flyway data migration tool in Docker

Language: Shell - Size: 48.8 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 1

LREN-CHUV/ansible-role-unattended-upgrades Fork of jnv/ansible-role-unattended-upgrades

Setup unattended-upgrades on Debian-based systems

Language: Shell - Size: 69.3 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

LREN-CHUV/ansible-lib Fork of silpion/ansible-lib

Library like task files to be included from third party ansible roles

Language: Shell - Size: 46.9 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

LREN-CHUV/ansible-role-docker-compose Fork of tumf/ansible-role-docker-compose

A ansible role to install docker-compose

Language: Shell - Size: 16.6 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

LREN-CHUV/data-db-setup

Setup for the database containing features data

Language: Java - Size: 224 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 1

LREN-CHUV/sample-meta-db-setup

Language: Shell - Size: 52.7 KB - Last synced at: 6 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

LREN-CHUV/sample-data-db-setup

Create a set of tables containing sample data in a database

Language: Shell - Size: 1010 KB - Last synced at: 3 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 2

LREN-CHUV/mip-data-db-setup-seed

Seed for data projects injecting their data into a relational database

Language: Shell - Size: 27.3 KB - Last synced at: 6 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

LREN-CHUV/mip-meta-db-setup-seed

Seed for metadata projects based on MIP CDE variables

Language: Shell - Size: 18.6 KB - Last synced at: 3 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

LREN-CHUV/mip-cde-data-db-setup

Create the table used to store MIP CDE variables in a database

Language: Shell - Size: 101 KB - Last synced at: 11 days ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

LREN-CHUV/meta-db-setup

Setup for meta-db database which contains the list of variables and groups supported by MIP

Language: Scala - Size: 99.6 KB - Last synced at: 28 days ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

LREN-CHUV/woken-db-setup

Creation and control scripts for the Postgres database used to store analytics results in the MIP

Language: Shell - Size: 48.8 KB - Last synced at: about 1 month ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 2

LREN-CHUV/java-base-docker-images

Collection of Docker images for Java, including the base images created for the Algorithm Factory / Woken

Language: Java - Size: 625 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 2

LREN-CHUV/r-mip-adaptor

R helper functions to connect to a database via JDBC

Language: R - Size: 70.3 KB - Last synced at: 6 months ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 2

LREN-CHUV/r-base-docker-images

Docker images used to integrate the algorithms provided for the Medical Informatics Platform (MIP)

Language: Shell - Size: 2.56 MB - Last synced at: about 2 months ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 3

LREN-CHUV/MIPTestAlgorithm

Rstudio project with test notebooks for MIP algorithms

Size: 383 KB - Last synced at: 6 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

LREN-CHUV/ansible-util Fork of silpion/ansible-util

Role for base configuration of Ansible roles developed at Silpion.

Language: Ruby - Size: 114 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

LREN-CHUV/ansible-zookeeper Fork of ludovicc/ansible-zookeeper

Ansible role for the installation of Apache Zookeeper

Language: Dockerfile - Size: 30.3 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

LREN-CHUV/ansible-java Fork of AnsibleShipyard/ansible-java

Ansible Role for the installation of Java (OpenJDK)

Language: Dockerfile - Size: 30.3 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

LREN-CHUV/ansible-mesos Fork of ludovicc/ansible-mesos

Ansible role for the installation of Apache Mesos and configuration of a Mesos cluster

Size: 123 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 2

LREN-CHUV/ansible-docker Fork of ludovicc/ansible-docker

Ansible role for the installation of Docker engine

Size: 50.8 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

LREN-CHUV/algorithm-repository

Repository of functions or algorithms packaged (with Docker) for Algorithm Factory/Woken

Language: Python - Size: 32.9 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 3 - Forks: 10

LREN-CHUV/mip-sdm

Software Delivery Machine for MIP

Language: TypeScript - Size: 2.58 MB - Last synced at: about 16 hours ago - Pushed at: 23 days ago - Stars: 0 - Forks: 1

LREN-CHUV/caddy-docker Fork of abiosoft/caddy-docker

Docker container for Caddy

Language: Shell - Size: 88.9 KB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 2

LREN-CHUV/hierarchizer

Reorganize DICOM files following a hierarchy based on meta-data fields

Language: Python - Size: 47.9 KB - Last synced at: 6 months ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 1

LREN-CHUV/xnat-docker Fork of chaselgrove/xnat-docker

XNAT on Docker

Language: Shell - Size: 23.4 KB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 2 - Forks: 1

LREN-CHUV/sklearn_to_pfa

Convert Scikit Learn models to PFA

Size: 4.88 KB - Last synced at: 6 months ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0

LREN-CHUV/sunburst

Language: JavaScript - Size: 1.8 MB - Last synced at: 6 months ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 1

LREN-CHUV/gene-expression

Language: JavaScript - Size: 62.8 MB - Last synced at: 6 months ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 1

LREN-CHUV/chronos Fork of mesos/chronos

Fault tolerant job scheduler for Mesos which handles dependencies and ISO8601 based schedules

Language: Scala - Size: 7.15 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

LREN-CHUV/dev-setup

Language: Shell - Size: 7.58 MB - Last synced at: about 1 month ago - Pushed at: 9 months ago - Stars: 0 - Forks: 1

LREN-CHUV/MIPMap-demo-ehr-to-i2b2

Demo for MipMap converting EHR data to I2B2

Language: Shell - Size: 32.2 KB - Last synced at: 6 months ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 1

LREN-CHUV/ehr-to-i2b2

Import EHR data to I2B2.

Language: Python - Size: 46.9 KB - Last synced at: 2 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 2

LREN-CHUV/maracker Fork of groovytron/maracker

API aiming to make Human Brain Project's Medical Informatics Platform's developped apps deployment on Mesos Marathon easier.

Language: Python - Size: 16.6 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

LREN-CHUV/bootstrap-mip-app

Framework to create extension apps for the MIP portal.

Language: CSS - Size: 4.83 MB - Last synced at: 3 months ago - Pushed at: almost 9 years ago - Stars: 0 - Forks: 1

LREN-CHUV/2d-biological-rules

2D view of relations between proteins, genes, brain regions, diseases, etc.

Language: CSS - Size: 430 KB - Last synced at: 6 months ago - Pushed at: almost 9 years ago - Stars: 0 - Forks: 1

LREN-CHUV/svm-classification

SVM Classification

Language: Matlab - Size: 14.6 KB - Last synced at: 17 days ago - Pushed at: over 8 years ago - Stars: 0 - Forks: 1

LREN-CHUV/i2b2-flattening

Generate a flat CSV file from an I2B2 data (containing brain features, demographic data, etc).

Language: Python - Size: 39.1 KB - Last synced at: 6 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1

LREN-CHUV/hbplregress

Linear regression for the MIP woken platform

Language: R - Size: 34.2 KB - Last synced at: 6 months ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 1

LREN-CHUV/labkey-docker

Docker container for LabKey.

Size: 9.77 KB - Last synced at: 6 months ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 2

LREN-CHUV/data-catalog-setup

Migration scripts for the Data Catalog database used to capture provenance information on all files

Language: Python - Size: 69.3 KB - Last synced at: 30 days ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 1

LREN-CHUV/mip-brain-insights Fork of j-nolan/mip-brain-insights

A brain atlas viewer with region-specific data

Language: JavaScript - Size: 188 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1

LREN-CHUV/mip-communication-website Fork of j-nolan/mip-communication-website

Language: JavaScript - Size: 30.8 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0

LREN-CHUV/Loris Fork of aces/Loris

LORIS is a web-accessible database solution for longitudinal multi-site studies.

Language: PHP - Size: 67.1 MB - Last synced at: over 1 year ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0

LREN-CHUV/qMRI

Software for calculation of qMRI data from raw MRI images

Language: Matlab - Size: 2.4 MB - Last synced at: 6 months ago - Pushed at: over 8 years ago - Stars: 0 - Forks: 0

LREN-CHUV/factor-analysis

Factor analysis for Disease progression

Language: Matlab - Size: 13.7 KB - Last synced at: 3 months ago - Pushed at: over 8 years ago - Stars: 0 - Forks: 1

LREN-CHUV/i2b2-setup

I2B2 star schema deployed with Alembic

Language: Python - Size: 54.7 KB - Last synced at: 3 days ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 2

LREN-CHUV/redcap-data-parser

Converts csv files exported from redcap to a microsoft word document

Language: Python - Size: 1.58 MB - Last synced at: 6 months ago - Pushed at: almost 9 years ago - Stars: 0 - Forks: 0

LREN-CHUV/mip-apps-manager

Language: Python - Size: 4.88 KB - Last synced at: 6 months ago - Pushed at: almost 9 years ago - Stars: 0 - Forks: 0

LREN-CHUV/hbpsummarystats

Summay statistics used to draw a boxplot over a dataset

Language: R - Size: 27.3 KB - Last synced at: 6 months ago - Pushed at: over 9 years ago - Stars: 1 - Forks: 1

LREN-CHUV/portal-specs

Specifications for the web portal

Language: Shell - Size: 2.22 MB - Last synced at: about 1 month ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 1

LREN-CHUV/rocker Fork of rocker-org/rocker

R configurations for Docker

Language: Shell - Size: 199 KB - Last synced at: over 1 year ago - Pushed at: over 9 years ago - Stars: 0 - Forks: 0

LREN-CHUV/cromwell Fork of broadinstitute/cromwell

Workflow Execution Engine using WDL

Language: Scala - Size: 3.27 MB - Last synced at: over 1 year ago - Pushed at: almost 10 years ago - Stars: 0 - Forks: 0