MRCIEU/methylhead

Language: Python - Size: 452 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 1 - Forks: 0

MRCIEU/opengwas-api

API for MRC-IEU OpenGWAS

Language: Python - Size: 21.4 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 5 - Forks: 2

MRCIEU/mrcieu.r-universe.dev

R packages for mrcieu.r-universe.dev

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MRCIEU/upptime

Use upptime to monitor web platform status

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MRCIEU/genotype-phenotype-api

Language: Python - Size: 7.08 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 1 - Forks: 0

MRCIEU/docker_twosamplemr

Dockerfile for TwoSampleMR DockerHub image

Language: R - Size: 203 KB - Last synced at: 11 days ago - Pushed at: 12 days ago - Stars: 0 - Forks: 0

MRCIEU/TwoSampleMR

R package for performing 2-sample MR using MR-Base database

Language: R - Size: 60.4 MB - Last synced at: 11 days ago - Pushed at: 12 days ago - Stars: 498 - Forks: 184

MRCIEU/opengwas-gwas-indexing

Language: Python - Size: 57.6 KB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 0 - Forks: 0

MRCIEU/assertion_extraction

Language: Jupyter Notebook - Size: 21.9 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 3 - Forks: 0

MRCIEU/metaboprep

a pipeline of metabolomics data processing and quality control

Language: R - Size: 38.8 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 25 - Forks: 11

MRCIEU/phs-space-audit

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MRCIEU/ieugwasr

R interface to the IEU GWAS database API

Language: R - Size: 23.2 MB - Last synced at: 6 days ago - Pushed at: about 1 month ago - Stars: 96 - Forks: 25

MRCIEU/ieugwaspy

Python interface to the MRC IEU OpenGWAS API

Language: Python - Size: 112 KB - Last synced at: 7 days ago - Pushed at: about 1 month ago - Stars: 10 - Forks: 3

MRCIEU/awesome-ai

Awesome list for all things AI, ML and deep learning

Size: 116 KB - Last synced at: 5 days ago - Pushed at: about 5 years ago - Stars: 57 - Forks: 7

MRCIEU/Lifecourse-GWAS

Language: R - Size: 115 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 5 - Forks: 0

MRCIEU/gwasvcf

Reading, querying and writing GWAS summary data in VCF format

Language: R - Size: 18.9 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 81 - Forks: 18

MRCIEU/gpmapr

An R interface to https://gpmap.opengwas.io/api

Language: R - Size: 1 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0

MRCIEU/BIOMAP_ad_ewas

V2 of BIOMAP atopic dermatitis EWAS pipeline. Builds on the original (V1) pipeline by Tom Battram (https://github.com/thomasbattram/ad-cse)

Language: R - Size: 43.9 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

MRCIEU/temmpo

Text mining for mechanism prioritisation

Language: Python - Size: 293 MB - Last synced at: 10 days ago - Pushed at: 11 days ago - Stars: 6 - Forks: 2

MRCIEU/mr-pubmed-abstracts

Analysis of MR PubMed Abstracts

Language: Jupyter Notebook - Size: 38.4 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 1

MRCIEU/opengwas

Size: 35.2 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

MRCIEU/opengwas-dbsnp-import

Language: Python - Size: 15.6 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

MRCIEU/opengwas-redis-proxy

Language: Python - Size: 9.77 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

MRCIEU/genetics.binaRies

Binaries for tools used in genetics in an R package

Language: R - Size: 51.4 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 10 - Forks: 6

MRCIEU/opengwas-manual-uploads

Collection of scripts for manually added datasets to OpenGWAS

Language: Jupyter Notebook - Size: 25.4 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

MRCIEU/bbt_research Fork of Lekanville/bbt_research

Research on basal body temperature

Language: Python - Size: 1.07 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

MRCIEU/aries

Functions for loading the ARIES DNA methhylation data

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MRCIEU/godmc-faster-residuals

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MRCIEU/PHESANT

PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank

Language: R - Size: 2.8 MB - Last synced at: 4 months ago - Pushed at: about 1 year ago - Stars: 146 - Forks: 68

MRCIEU/rhds-tcga

Language: R - Size: 1.2 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 5 - Forks: 0

MRCIEU/dnam-lung-cancer-screening-panel

Language: HTML - Size: 57.5 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 2 - Forks: 0

MRCIEU/multi-ancestry-prs-practical

Multi-ancestry PRS practical

Language: R - Size: 622 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

MRCIEU/finetune-efo

Language: R - Size: 796 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

MRCIEU/opengwas-metadata-curation

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MRCIEU/2025-p3-retreat-hackathon

Language: Jupyter Notebook - Size: 33.5 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

MRCIEU/GeneHackman

Pipeline for genetic epidemiology projects at Univsersity of Bristol

Language: R - Size: 7.14 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 14 - Forks: 1

MRCIEU/bp-drug-mr

Multi-ancestry MR of blood pressure drug targets

Language: HTML - Size: 9.87 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 8 - Forks: 2

MRCIEU/rare-polygenic

Language: R - Size: 455 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

MRCIEU/MVMRalcsmo

A repository of code for a MVMR study of the effect of alcohol and smoking on lung function

Language: R - Size: 14.6 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 1

MRCIEU/opengwas-phewas-indexing

Language: Python - Size: 28.3 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

MRCIEU/IL6-activity

Modelling the effect of IL-6 bioavailability/activity using genetic variants.

Language: R - Size: 25.4 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

MRCIEU/mdd-proteome-ancestry

Group 6 project

Language: HTML - Size: 4.47 MB - Last synced at: 7 months ago - Pushed at: 8 months ago - Stars: 1 - Forks: 4

MRCIEU/ukb-rap-utils

Language: Shell - Size: 107 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 2 - Forks: 0

MRCIEU/GwasDataImport

R package to upload data to GWAS database

Language: R - Size: 12.4 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 3 - Forks: 1

MRCIEU/python_and_health_ds_training

Repo for Introductions to Python and Applied Health Data Science Training

Language: Jupyter Notebook - Size: 4.56 MB - Last synced at: 8 months ago - Pushed at: 9 months ago - Stars: 9 - Forks: 2

MRCIEU/quarto-intro

Introduction to quarto given at the IEU retreat

Language: JavaScript - Size: 6.41 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 1

MRCIEU/ieu-retreat-workshop-conda-snakemake

Language: R - Size: 2.5 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

MRCIEU/conda-hpc-snakemake-example

Example for AHDS

Language: R - Size: 1.12 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 3

MRCIEU/vectology

Using language models and ontology topology to perform semantic mapping of traits between biomedical datasets

Language: Jupyter Notebook - Size: 41 MB - Last synced at: 8 months ago - Pushed at: over 2 years ago - Stars: 10 - Forks: 1

MRCIEU/MSHDS-AHDS-formative

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MRCIEU/epigraphdb-r

R package for epigraphdb

Language: R - Size: 5.88 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 27 - Forks: 8

MRCIEU/GLU

A tool for analysing continuous glucose monitoring (CGM) data in epidemiology.

Language: R - Size: 274 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 11 - Forks: 10

MRCIEU/MR-PREG

Repository for the MR-PREG collaboration

Language: R - Size: 291 KB - Last synced at: 4 months ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 1

MRCIEU/epigraphdb

Examples on using EpiGraphDB

Language: Jupyter Notebook - Size: 2.43 MB - Last synced at: 8 months ago - Pushed at: over 4 years ago - Stars: 26 - Forks: 6

MRCIEU/pygwasvcf

Python library for reading GWAS summary statistics in GWAS-VCF files

Language: Python - Size: 58.6 KB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 8 - Forks: 5

MRCIEU/PHESANT-IV-pheWAS-relative-school-age

IV-pheWAS of relative school age

Language: R - Size: 134 KB - Last synced at: 9 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

MRCIEU/traithunter

Language: Jupyter Notebook - Size: 3.38 MB - Last synced at: 8 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

MRCIEU/covid-cancer

The network of SARS-CoV-2—cancer molecular interactions and pathways

Language: R - Size: 1.48 MB - Last synced at: 12 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

MRCIEU/biorxiv-medrxiv-tdm

Language: Jupyter Notebook - Size: 1.05 MB - Last synced at: 8 months ago - Pushed at: almost 2 years ago - Stars: 3 - Forks: 0

MRCIEU/epigraphdb-asq

Annotated Semantic Queries

Language: Jupyter Notebook - Size: 5.69 MB - Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0

MRCIEU/Psychiatric-disorder-pheWAS-UKBB

Language: R - Size: 57.6 KB - Last synced at: 9 months ago - Pushed at: almost 6 years ago - Stars: 4 - Forks: 1

MRCIEU/mr-uganda-hackathon-2023-2

Language: R - Size: 67.4 KB - Last synced at: 12 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

MRCIEU/UKBiobankGWAS

Notes and code for running UK Biobank GWAS at the MRC IEU

Language: Python - Size: 57.6 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 13 - Forks: 3

MRCIEU/ieu-gwas-db-demo

Demo of IEU GWAS Database

Language: Jupyter Notebook - Size: 6.91 MB - Last synced at: 8 months ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 2

MRCIEU/ukbb-prot-prs

Language: R - Size: 457 MB - Last synced at: 8 months ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 1

MRCIEU/gwasglue2

Connecting GWAS summary data to analytical tools

Language: R - Size: 7.81 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 14 - Forks: 2

MRCIEU/gwas_processing

Language: Python - Size: 8.33 MB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 1

MRCIEU/Health-and-Wellbeing-MR

Language: R - Size: 20.5 KB - Last synced at: 9 months ago - Pushed at: about 7 years ago - Stars: 27 - Forks: 12

MRCIEU/CAMERA Fork of yoonsucho/CAMERA

Mendelian Randomization approach using Cross Ancestral Model

Language: R - Size: 55 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

MRCIEU/gwas2vcf

Convert GWAS summary statistics to VCF

Language: Python - Size: 5.42 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 41 - Forks: 15

MRCIEU/COVIDITY_ProbQBA

Language: R - Size: 224 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

MRCIEU/ewascatalog

Language: HTML - Size: 74.8 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

MRCIEU/predicting-ALSPAC-dropout

Language: R - Size: 1.24 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

MRCIEU/cistrans_pqtl

Language: R - Size: 4.31 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

MRCIEU/Estimation-of-the-impact-of-flavour-restrictions-on-population-smoking-and-e-cigarette-use

Analysis code to calculate proportions to be inputed into the policy decision tool on the impact of a ban on flavoured e-cigarettes, using data from Action on Smoking Health, the Smoking Toolkit Study and the National Youth Tobacco Survey.

Language: R - Size: 8.79 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

MRCIEU/MR-randomization-test

Language: R - Size: 331 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 1

MRCIEU/epigenetics-journal-club

Repository for the IEU epigenetics journal club papers, presentations and scripts

Language: Python - Size: 243 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 1

MRCIEU/family-perspective

Language: R - Size: 5.48 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

MRCIEU/.github

README for MRCIEU GitHub Organisation

Size: 493 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1

MRCIEU/Smoking_IBD

Scripts for analysing the association between smoking and inflammatory bowel disease (IBD)

Language: R - Size: 36.1 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 0

MRCIEU/PHESANT-MR-pheWAS-BMI

Language: R - Size: 88.9 KB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 9 - Forks: 4

MRCIEU/PhenoSpD

Language: R - Size: 1.4 MB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 17 - Forks: 2

MRCIEU/epigraphdb-pqtl

This is the github repository to provide the R scripts been used in the phenome-wide Mendelian randomization study of plasma proteome.

Language: R - Size: 212 KB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 26 - Forks: 11

MRCIEU/mdNLR-and-Rheumatoid-Arthritis-Script

Rheumatoid arthritis (RA) is a disease of chronic systemic inflammation (SI). In the present study, we used four datasets to explore whether methylation-derived neutrophil-to-lymphocyte ratio (mdNLR) might be a marker of SI in new onset, untreated, and treated prevalent RA cases and/or a marker of treatment response to the tumour necrosis factor inhibitor (TNFi) etanercept.

Language: R - Size: 10.7 KB - Last synced at: almost 2 years ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 0

MRCIEU/BiobankPhenotypes

Language: Python - Size: 6.84 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 8 - Forks: 2

MRCIEU/mendelvar_standalone

Standalone version of the MendelVar pipeline

Language: Python - Size: 129 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 0

MRCIEU/GoDMC_mQTLdb

Language: PHP - Size: 20 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

MRCIEU/MELODI-Presto

A fast and programmatic MELODI

Language: Jupyter Notebook - Size: 6.3 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 13 - Forks: 4

MRCIEU/gwasglue

Linking GWAS data to analytical tools in R

Language: R - Size: 6.16 MB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 71 - Forks: 35

MRCIEU/MRInstruments

Data objects for various sets of instruments

Language: R - Size: 69.6 MB - Last synced at: almost 2 years ago - Pushed at: about 5 years ago - Stars: 32 - Forks: 18

MRCIEU/mrbase_casestudies

Using the MR-Base platform to investigate risk factors and drug targets for thousands of phenotypes

Language: HTML - Size: 1.81 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 6 - Forks: 4

MRCIEU/prot-lungcancer

Protein associations with lung cancer pre

Language: R - Size: 7.81 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

MRCIEU/godmc_phase1_analysis

Language: Shell - Size: 146 MB - Last synced at: almost 2 years ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 0

MRCIEU/godmc-api

API to interface with the godmc-database

Language: HTML - Size: 3.25 MB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

MRCIEU/godmc-database

Language: R - Size: 1.78 MB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

MRCIEU/queryukbppp

Query UKB-PPP data

Language: R - Size: 8.79 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

MRCIEU/MultiverseMR_Smoking_Schizophrenia

Code to apply a multiverse Mendelian randomisation approach to the example of the potential causal effect of smoking behaviour on schizophrenia.

Language: R - Size: 24.4 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

MRCIEU/MR-E-Values

Code to calculate effect estimates and descriptive statistics to be used as inputs for the MR-E-Values shiny app (https://mark-gibson.shinyapps.io/mr-e-values_shiny_app/), using the applied example of the potential causal effect of smoking behaviour on schizophrenia.

Language: R - Size: 5.86 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

MRCIEU/Confounder-MR

Code to conduct Confounder-MR on the applied examples of the potential causal effects of cycling to work on cardiovascular disease, and processed meat consumption on all-cause dementia.

Language: R - Size: 25.4 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

MRCIEU/igd-hpc-pipeline

Processing and importing new GWAS data batches

Language: Shell - Size: 17.6 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0