MoseleyBioinformaticsLab/mwFileStatusWebsite

Repository hosting the Metabolomics Workbench File Status Website. A Third party website containing file status and validation information for all publicly available MW analysis data files.

Language: HTML - Size: 191 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 4 - Forks: 0

MoseleyBioinformaticsLab/academic_tracker

Academic Tracker is a package that can search PubMed, Crossref, ORCID, and Google Scholar for publications given a list of authors or publication citations.

Language: Python - Size: 6.81 MB - Last synced at: 26 days ago - Pushed at: 8 months ago - Stars: 16 - Forks: 6

MoseleyBioinformaticsLab/gpu_tracker

Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage.

Language: Python - Size: 5.45 MB - Last synced at: about 22 hours ago - Pushed at: about 1 month ago - Stars: 4 - Forks: 1

MoseleyBioinformaticsLab/visualizationQualityControl

Visualization methods for omics dataset quality control

Language: R - Size: 13.7 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 10 - Forks: 5

MoseleyBioinformaticsLab/ICIKendallTau

Information-Content-Informed Kendall-tau in R

Language: R - Size: 73.4 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 6 - Forks: 1

MoseleyBioinformaticsLab/LabSystemStatus

Contains files describing the current status of lab computers and services.

Language: HTML - Size: 8.79 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/categoryCompare2

Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.

Language: R - Size: 40.6 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 1

MoseleyBioinformaticsLab/manuscript.ICIKendallTau

Language: R - Size: 258 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/icikt

Language: Python - Size: 6.58 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 1 - Forks: 0

MoseleyBioinformaticsLab/MESSES

MESSES (Metadata from Experimental SpreadSheets Extraction System) is a Python package that facilitates the conversion of tabular data into other formats.

Language: Python - Size: 47.3 MB - Last synced at: 17 days ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/pdb_eda

A Python tool for parsing and analyzing electron density maps data available from the worldwide Protein Data Bank

Language: Python - Size: 3.54 MB - Last synced at: 7 months ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 1

MoseleyBioinformaticsLab/conwell-manuscript.ChronicPancreatitisUrineMetabolomics

Language: R - Size: 98.3 MB - Last synced at: 10 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/kegg_pull

Package that facilitates pulling database entries from KEGG via its REST API

Language: Python - Size: 4.62 MB - Last synced at: 20 days ago - Pushed at: over 1 year ago - Stars: 9 - Forks: 1

MoseleyBioinformaticsLab/mwtab

The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for archival of Mass Spectrometry (MS) and Nuclear Magnetic Resonance (NMR) experimental data.

Language: Python - Size: 95.4 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 12 - Forks: 2

MoseleyBioinformaticsLab/moseleybioinformaticslab.r-universe.dev

maintaining the information for r-universe

Size: 3.91 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/ScanCentricPeakCharacterization

R package for scan-centric, frequency based peak characterization of mass spectrometry

Language: R - Size: 765 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/isoenum

Isotopic (iso) enumerator (enum) - enumerates isotopically resolved InChI (International Chemical Identifier) for metabolites.

Language: Python - Size: 183 KB - Last synced at: 9 months ago - Pushed at: over 5 years ago - Stars: 4 - Forks: 0

MoseleyBioinformaticsLab/SAGA_optimize

Combined simulated annealing and genetic algorithm (SAGA) for model parameter optimization

Language: Python - Size: 91.8 KB - Last synced at: about 10 hours ago - Pushed at: almost 6 years ago - Stars: 6 - Forks: 2

MoseleyBioinformaticsLab/ctfile

Parser for chemical table file (CTfile) a family of text-based chemical file formats (e.g. Molfile, SDfile) that describe molecules and chemical reactions.

Language: Python - Size: 1.42 MB - Last synced at: 18 days ago - Pushed at: about 3 years ago - Stars: 7 - Forks: 3

MoseleyBioinformaticsLab/BaMORC

Bayesian Model Optimized Reference Correction (BaMORC) Method for Assigned and Unassigned Protein NMR Spectra

Language: R - Size: 3.44 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 1

MoseleyBioinformaticsLab/manuscript.subsamplingCorrelation

how much of features / samples do we need to recreate full data correlations

Language: R - Size: 199 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/jpredapi

Python library and CLI for submitting jobs to JPred - A Protein Secondary Structure Prediction Server

Language: Python - Size: 79.1 KB - Last synced at: 11 days ago - Pushed at: over 6 years ago - Stars: 10 - Forks: 3

MoseleyBioinformaticsLab/li.ntkoldlrkoLipidomics

Language: R - Size: 62.9 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/md_harmonize

Language: Python - Size: 935 KB - Last synced at: 30 days ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/STRINGDatabaseManipulation

Language: R - Size: 61.6 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/miagis

Generate and validate GIS metadata.

Language: Python - Size: 22.6 MB - Last synced at: 14 days ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 1

MoseleyBioinformaticsLab/nmrstarlib

The nmrstarlib package is a Python library that facilitates reading and writing NMR-STAR formatted files.

Language: Python - Size: 9.04 MB - Last synced at: 12 days ago - Pushed at: almost 4 years ago - Stars: 5 - Forks: 1

MoseleyBioinformaticsLab/GOcats

A tool for categorizing Gene Ontology into subgraphs of user-defined emergent concepts

Language: Python - Size: 7.61 MB - Last synced at: 27 days ago - Pushed at: almost 2 years ago - Stars: 7 - Forks: 2

MoseleyBioinformaticsLab/smirfeTools

Language: R - Size: 1.38 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/manuscript.peakCharacterization

Language: R - Size: 205 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 1

MoseleyBioinformaticsLab/FTMS.peakCharacterization

Language: R - Size: 457 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/profDGE48 Fork of bartongroup/profDGE48

Fork of: Code base for profiling highly replicated differential gene expression RNA-seq.

Size: 7.32 MB - Last synced at: about 2 years ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/SDAMS Fork of Stat-Li/SDAMS

Fork of: A Two-Part Semi-Parametric Model for Metabolomics and Proteomics Data

Language: R - Size: 2.02 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/diffexpr Fork of wckdouglas/diffexpr

Porting DESeq2 and DEXSeq into python via rpy2

Size: 86.9 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/moiety_modeling

Moiety Modeling implemented in Python

Language: Python - Size: 16 MB - Last synced at: 25 days ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/isoenum-webgui

Language: Python - Size: 1.59 MB - Last synced at: 21 days ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/jpredapir

R library and CLI for submitting jobs to JPred - A Protein Secondary Structure Prediction Server

Language: R - Size: 178 KB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0

MoseleyBioinformaticsLab/filehandles

filehandles is a file handle manager that lets you generate file handles from different file sources.

Language: Python - Size: 3.69 MB - Last synced at: 9 days ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/ssc

Variance informed DBSCAN for protein NMR spin system clustering.

Language: Python - Size: 11.8 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/chi2plookup

chi2plookup package provides a simple interface for creating C++ header file that contains pre-generated array(s) of p-values for chi-square distribution.

Language: Python - Size: 31.3 KB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/bmrbdl

Language: Python - Size: 11.7 KB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

MoseleyBioinformaticsLab/waitcopy

R package to allow copying within specific time and with intervals between copies

Language: R - Size: 37.1 KB - Last synced at: about 2 years ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0