NeotomaDB/DataBUS_Ostracode 📦

Language: Python - Size: 900 KB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 0 - Forks: 1

NeotomaDB/neotomapydoi

A repository for managing Neotoma DataCite DOIs using Python.

Language: Python - Size: 325 KB - Last synced at: 6 days ago - Pushed at: 7 days ago - Stars: 1 - Forks: 0

NeotomaDB/Neotoma_SQL

Repository for functions associated with Neotoma's Postgres DB

Language: Python - Size: 5.68 MB - Last synced at: 9 days ago - Pushed at: 10 days ago - Stars: 1 - Forks: 0

NeotomaDB/DataBUS

The Neotoma Paleoecology Database Data Bulk Uploader System

Language: Python - Size: 1.95 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 0 - Forks: 3

NeotomaDB/neotoma_database_functions

A repository for managing database functions for the Neotoma Database.

Language: PLpgSQL - Size: 4.04 MB - Last synced at: 15 days ago - Pushed at: 25 days ago - Stars: 0 - Forks: 0

NeotomaDB/DataBUS_SISAL

Language: Python - Size: 2.66 MB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 0 - Forks: 0

NeotomaDB/api_nodetest

node.js and express implementation for the Neotoma API

Language: HTML - Size: 10.9 MB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 2 - Forks: 1

NeotomaDB/tilia_api

A repository for the implementation of the Tilia/uploader API

Language: JavaScript - Size: 552 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 1

NeotomaDB/neotoma2

Repository for the updated neotoma R package.

Language: R - Size: 18.8 MB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 9 - Forks: 12

NeotomaDB/system_documentation

A repository to manage Neotoma's complete system documentation.

Language: Python - Size: 11.1 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

NeotomaDB/landingpagev3

A repository for the updated (Vue3) Neotoma Landing Pages

Language: CSS - Size: 2.07 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

NeotomaDB/Workshops_Sisal Fork of SISALdb/Workshops

Language: HTML - Size: 31.3 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

NeotomaDB/neotoma_binder

neotoma2 R Binder

Language: R - Size: 1.36 MB - Last synced at: 3 days ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

NeotomaDB/ndbduplicates

A small script and package to manage checking and fixing duplicate records in the Neotoma Database.

Language: Python - Size: 25.4 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

NeotomaDB/landingPages

A repository specifically for generating RMarkdown landing pages for Neotoma Datasets

Language: JavaScript - Size: 4.99 MB - Last synced at: 1 day ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

NeotomaDB/clean_backup

A repository to generate automated backups for the Neotoma PostgreSQL database using AWS infrastructure

Language: Shell - Size: 153 KB - Last synced at: about 1 month ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

NeotomaDB/Explorer

Neotoma Explorer - issue tracker and code repository

Language: JavaScript - Size: 3.61 MB - Last synced at: 6 months ago - Pushed at: 7 months ago - Stars: 2 - Forks: 0

NeotomaDB/repo_best_practices

A repo that describes the recommended practices for setting up new repositories within the Neotoma Paleoecology Database.

Size: 77.1 KB - Last synced at: 8 days ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

NeotomaDB/taxoninsertion

A package to bulk upload taxonomic data (beetles in this case) from Family/genus/species info.

Language: Python - Size: 48.8 KB - Last synced at: 7 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

NeotomaDB/NeotomaSummary

A repository to generate an overal summary of the Neotoma DB from a set of SQL and API calls.

Language: HTML - Size: 9.86 MB - Last synced at: 16 days ago - Pushed at: 9 months ago - Stars: 0 - Forks: 1

NeotomaDB/R-workshop

Developed R-workshop with webr-r and Quarto documents. Maintaining the binder at CurrentWorkshop for now.

Language: Python - Size: 190 MB - Last synced at: 7 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

NeotomaDB/Current_Workshop Fork of NeotomaDB/EPD_binder

Current Workshops for Neotoma

Language: HTML - Size: 160 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 3 - Forks: 2

NeotomaDB/Workshops

This repository is a location for storing and developing workshops materials.

Language: HTML - Size: 472 MB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 2 - Forks: 4

NeotomaDB/StateofDB_DockerCompose

Building the State of the DB from 2 Docker containers: one for Postgres, one for RStudio

Language: Dockerfile - Size: 886 KB - Last synced at: 14 days ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

NeotomaDB/Interoperability_DeepDive

A repository for managing the FAIROS Quaternary Interoperability project.

Language: Python - Size: 17.1 MB - Last synced at: 7 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

NeotomaDB/DataBUS_Lead210

Lead210 DataBUS push.

Language: Python - Size: 1.12 MB - Last synced at: 6 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

NeotomaDB/DataBUS_Isotopes Fork of NeotomaDB/DataBUS

The Neotoma Paleoecology Database Data Bulk Uploader System

Language: Python - Size: 1.12 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

NeotomaDB/AssignDOIs

A repository describing the motivation for, and detailing the process of, minting DOIs for Neotoma

Language: HTML - Size: 2.46 MB - Last synced at: 7 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

NeotomaDB/api_dockers

A repository for docker containers that can be used to run a local version of the Neotoma infrastructure.

Language: Dockerfile - Size: 10.7 KB - Last synced at: 4 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

NeotomaDB/AMQUA_binder

A repository for the 2022 AMQUA Neotoma workshop

Language: HTML - Size: 18.4 MB - Last synced at: 3 days ago - Pushed at: 10 months ago - Stars: 0 - Forks: 1

NeotomaDB/neotomadb.github.io

Neotoma website on github.

Language: HTML - Size: 305 MB - Last synced at: 14 days ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

NeotomaDB/MetaExtractor

A repository for the UBC MDS Capstone team to develop a metadata extractor for Neotoma

Language: Jupyter Notebook - Size: 51.8 MB - Last synced at: 25 days ago - Pushed at: 11 months ago - Stars: 9 - Forks: 3

NeotomaDB/xlsx2Tilia

Tilia file creation (XML) from an MS Excel database and template in Python

Language: Python - Size: 160 KB - Last synced at: 7 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

NeotomaDB/Workbooks

A repository for paleoecology-specific workflows.

Language: HTML - Size: 2.1 MB - Last synced at: 12 days ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0

NeotomaDB/StratigraphicDiagrammer

Repo, code base, and issue tracker for Neotoma Explorer's Stratigraphic Diagrammer

Language: HTML - Size: 33.2 KB - Last synced at: 11 days ago - Pushed at: 10 months ago - Stars: 3 - Forks: 0

NeotomaDB/SQL_Project_Repository

A repository for SQL project starts.

Language: Python - Size: 671 KB - Last synced at: 7 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

NeotomaDB/PaleoVisualization

A broad survey of visualization techniques in the geoscientific literature, based on publications that cite Neotoma.

Language: HTML - Size: 495 KB - Last synced at: 14 days ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

NeotomaDB/Notebooks

A place for self-contained notebooks to show common paleoecological operations.

Size: 4.88 KB - Last synced at: 13 days ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

NeotomaDB/neotomataxonomy Fork of scottsfarley93/neotomataxonomy

A viewer for Neotoma Taxonomic data.

Language: HTML - Size: 6.89 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

NeotomaDB/NeotomaPostgres

Docker image of the Neotoma SQL database

Language: Shell - Size: 90.8 KB - Last synced at: 7 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0

NeotomaDB/NeotomaDocker

A repository for the Neotoma Docker image and associated tooling.

Language: PLpgSQL - Size: 14.6 KB - Last synced at: 14 days ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

NeotomaDB/neotoma_modules

Interactive Neotoma Workshops

Language: JavaScript - Size: 420 MB - Last synced at: 7 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

NeotomaDB/neotoma_doi

Managing DOIs with a postgres database and the DataCite API.

Language: R - Size: 160 KB - Last synced at: 7 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 0

NeotomaDB/ndbLandingPage

A repository for DOI landing pages using Vue.js as the front-end.

Language: Vue - Size: 11.5 MB - Last synced at: 3 days ago - Pushed at: 23 days ago - Stars: 1 - Forks: 3

NeotomaDB/FAUNMAP_Import

Scripts and Files for exporting FAUNMAP data to Neotoma

Language: R - Size: 2.52 MB - Last synced at: 7 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

NeotomaDB/faircare_rcn

A repository for workshop knowledge and materials as part of the Past Biodiversity Change RCN

Size: 16.6 KB - Last synced at: 14 days ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

NeotomaDB/DwC-Mapping

A document explaining how we will map Neotoma against the DarwinCore Schema

Language: HTML - Size: 8.91 MB - Last synced at: 6 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

NeotomaDB/DataBUS_210Pb Fork of NeotomaDB/DataBUS

The Neotoma Paleoecology Database Data Bulk Uploader System

Language: Python - Size: 633 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

NeotomaDB/CrossRef_Publications Fork of SimonGoring/CrossRef_Publications

Importing metadata from CrossRef for Neotoma Publications

Language: HTML - Size: 5.24 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

NeotomaDB/AuthorNetwork

A repository for the test version of the Neotoma Author Network Shiny app.

Language: R - Size: 1.14 MB - Last synced at: 7 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

NeotomaDB/article-relevance Fork of NeotomaDB/MetaExtractor

Repository based on the UBC MDS Meta Extractor Project that just uses the article relevance component.

Language: Python - Size: 43.2 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

NeotomaDB/article_project

A project for the Docker Containers associated with the article-recommender.

Language: JavaScript - Size: 25.4 KB - Last synced at: 7 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

NeotomaDB/bulk-baconizing

Using bacon to generate a large number of new chronologies from existing Neotoma records.

Language: HTML - Size: 16.1 MB - Last synced at: 12 days ago - Pushed at: 10 months ago - Stars: 3 - Forks: 5

NeotomaDB/NeotomaBot Fork of SimonGoring/NeotomaBot

A twitter bot to search for new records and then post them to twitter.

Language: Python - Size: 135 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

NeotomaDB/RangeMapper

Code for making animations of Neotoma taxa using Carto VL

Language: HTML - Size: 283 MB - Last synced at: 1 day ago - Pushed at: 11 months ago - Stars: 2 - Forks: 1

NeotomaDB/QSR_Manuscript

Repository for scripts and figures associated with Neotoma ms. to be submitted to QSR

Language: R - Size: 1.36 MB - Last synced at: 5 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1

NeotomaDB/neotoma_lakes

A repository for managing the matching of lake data between national hydrographic databases and Neotoma records.

Language: HTML - Size: 34.8 MB - Last synced at: 25 days ago - Pushed at: 11 months ago - Stars: 1 - Forks: 1

NeotomaDB/neotoma_bookdown

An online manual for the Neotoma Database, authored using Bookdown.

Language: CSS - Size: 3.6 MB - Last synced at: 6 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

NeotomaDB/neotoma_article_api

A repository for the article relevance tool API

Language: JavaScript - Size: 12.7 KB - Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

NeotomaDB/MIOMAP_Ingest

Language: R - Size: 1.2 MB - Last synced at: about 8 hours ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

NeotomaDB/MetaExtractor_Paper

Language: TeX - Size: 3.8 MB - Last synced at: 12 days ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

NeotomaDB/EPD_binder

Neotoma Binder for EPD 2022 with sample workflows

Language: HTML - Size: 15.4 MB - Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 4

NeotomaDB/Education_Paper

A paper in prep about education with Neotoma

Language: HTML - Size: 18.4 MB - Last synced at: 13 days ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

NeotomaDB/bulkUploader

An R package to facilitate bulk-uploading records to the Neotoma Paleoecology Database.

Language: R - Size: 40.2 MB - Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

NeotomaDB/ANSP_Diatoms Fork of ericomalley13/ANSP_Diatoms

working with water chemistry and diatom data obtained from the Neotoma Database using the `neotoma2` R package

Language: HTML - Size: 935 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

NeotomaDB/neotoma Fork of ropensci/neotoma

Programmatic R interface to the Neotoma Paleoecological Database.

Language: R - Size: 7.8 MB - Last synced at: almost 2 years ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 0

NeotomaDB/IceAgeMapper Fork of WilliamsPaleoLab/IceAgeMapper

Niche viewer, ice age mapping and geovisualization.

Size: 174 MB - Last synced at: almost 2 years ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 0

NeotomaDB/Tilia Fork of SimonGoring/Tilia

A dummy repository for Tilia-related issues and resources.

Size: 3.91 KB - Last synced at: almost 2 years ago - Pushed at: over 9 years ago - Stars: 0 - Forks: 0