OpenMendel/SnpArrays.jl

Compressed storage for SNP data

Language: Julia - Size: 7.98 MB - Last synced: about 6 hours ago - Pushed: about 8 hours ago - Stars: 41 - Forks: 10

OpenMendel/PGENFiles.jl

Language: Julia - Size: 1.43 MB - Last synced: 25 days ago - Pushed: 25 days ago - Stars: 3 - Forks: 1

OpenMendel/OpenADMIXTURE.jl

Language: Julia - Size: 804 KB - Last synced: about 7 hours ago - Pushed: about 8 hours ago - Stars: 6 - Forks: 1

OpenMendel/MendelImpute.jl

OpenMendel package for haplotyping and imputation

Language: Julia - Size: 87.1 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 24 - Forks: 1

OpenMendel/TrajGWAS.jl

Language: Julia - Size: 3.81 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 11 - Forks: 1

OpenMendel/QuasiCopula.jl

A Flexible Quasi-Copula Distribution for Statistical Modeling

Language: Julia - Size: 180 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0

OpenMendel/HaploADMIXTURE.jl

Language: Julia - Size: 394 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2 - Forks: 0

OpenMendel/OrdinalMultinomialModels.jl

ordered multinomial models

Language: Julia - Size: 899 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 11 - Forks: 2

OpenMendel/OrdinalGWAS.jl

Genome-wide association studies (GWAS) for ordered categorical phenotypes

Language: Julia - Size: 3.86 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 20 - Forks: 7

OpenMendel/BGEN.jl

Language: Julia - Size: 12.9 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 10 - Forks: 0

OpenMendel/MendelIHT.jl

Iterative hard thresholding for l0 penalized regression

Language: Julia - Size: 119 MB - Last synced: 20 days ago - Pushed: 8 months ago - Stars: 22 - Forks: 4

OpenMendel/GeneticVariantBase.jl

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OpenMendel/VCFTools.jl

Julia utilities for handling VCF files

Language: Julia - Size: 2.48 MB - Last synced: 8 days ago - Pushed: about 2 months ago - Stars: 18 - Forks: 4

OpenMendel/VarianceComponentModels.jl

Utilities for fitting and testing variance component models

Language: Julia - Size: 2.36 MB - Last synced: 9 days ago - Pushed: over 1 year ago - Stars: 9 - Forks: 6

OpenMendel/MendelGWAS.jl

This package performs standard Genome-wide Association Studies.

Language: Julia - Size: 6.86 MB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 5 - Forks: 3

OpenMendel/LangeSymposium-ProgrammingWorkshop-20202022

OpenMendel tutorials for Lange's Symposium Programming Workshop

Language: HTML - Size: 8.76 MB - Last synced: 10 months ago - Pushed: about 4 years ago - Stars: 5 - Forks: 1

OpenMendel/ASHG-OpenMendelWorkshop-2020-Oct

OpenMendel tutorials for ASHG Workshop

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OpenMendel/WiSER.jl

Within-subject variance estimation by robust regression (WiSER)

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OpenMendel/ClassicMendel

Official Mendel package distribution

Size: 141 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 0

OpenMendel/MendelPlots.jl

Julia package for plotting results from GWAS

Language: Julia - Size: 7.51 MB - Last synced: 9 days ago - Pushed: over 1 year ago - Stars: 10 - Forks: 2

OpenMendel/MendelBase.jl

MendelBase contains the base functions of OpenMendel.

Language: Julia - Size: 224 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 5 - Forks: 3

OpenMendel/MendelGeneticCounseling.jl

This analysis option performs risk calculations for genetic counseling problems.

Language: Julia - Size: 155 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 2

OpenMendel/Tutorials

Basic OpenMendel tutorials

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OpenMendel/MendelSearch.jl

MendelSearch is a program for function optimization. Search permits bounds and linear constraints to be imposed on parameters and, in statistical applications, computes asymptotic standard errors and correlations of parameter estimates.

Language: Julia - Size: 247 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 1

OpenMendel/MendelTwoPointLinkage.jl

This analysis option performs two-point linkage analysis.

Language: Julia - Size: 878 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 1

OpenMendel/MendelLocationScores.jl

This analysis option maps a trait via the method of Location Scores, i.e., multipoint linkage analysis.

Language: Julia - Size: 878 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 2

OpenMendel/MendelKinship.jl

This analysis option computes kinship and other identity coefficients.

Language: Julia - Size: 6.65 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 1

OpenMendel/OpenMendel.github.io

The main website for the OpenMendel project.

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OpenMendel/ADMIXTURE.jl

Julia wrapper of the ADMIXTURE program for estimating ancestry

Language: Julia - Size: 155 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 5 - Forks: 0

OpenMendel/TraitSimulation.jl

Simulate phenotypes from any GLM model

Language: Julia - Size: 12.9 MB - Last synced: 9 days ago - Pushed: 12 months ago - Stars: 3 - Forks: 1

OpenMendel/GeneticCounseling_ASHG2019

Tutorials and data sets for ASHG 2019 workshop on Genetic Counseling.

Language: Jupyter Notebook - Size: 3.5 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 2 - Forks: 2

OpenMendel/MendelGeneDropping.jl

This package performs gene dropping with several useful options for the output.

Language: Julia - Size: 64.5 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 1

OpenMendel/MendelGameteCompetition.jl

This analysis option implements a gamete competition analysis, which is a generalization of the TDT analysis.

Language: Julia - Size: 80.1 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 1

OpenMendel/MendelEstimateFrequencies.jl

This analysis option calculates a likelihood-based estimate of allele frequencies.

Language: Julia - Size: 65.4 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 1

OpenMendel/MendelAimSelection.jl

This analysis option selects the SNPs that are most informative at predicting ancestry for your data — the best Ancestry Informative Markers (AIMs).

Language: Julia - Size: 10.9 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 1

OpenMendel/CodingStyle

Coding style guidelines for OpenMendel packages

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OpenMendel/RegressionTests

Collection of test cases for OpenMendel framework

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