OrangePomeranian/Master_thesis

Analysis of SNPs that have the greatest impact of appearance of mammary gland tumour in dogs.

Language: R - Size: 17 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

OrangePomeranian/RNA-seq_analysis_pipeline

Language: Shell - Size: 267 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

OrangePomeranian/methods_of_genetic_evaluation_of_animals

The project focused on the analysis of foxes from 3 different farms and the subsequent presentation of trait heritability results, genetic trends, breeding values and relationship matrix.

Language: Jupyter Notebook - Size: 24.5 MB - Last synced at: 9 months ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 1

OrangePomeranian/programming_cheatsheets

Size: 348 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

OrangePomeranian/OrangePomeranian

Config files for my GitHub profile.

Size: 104 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

OrangePomeranian/Genomic_Analysis_Pipeline_with_Snakemake

Genomic Analysis Pipeline: Automate data preprocessing, variant calling, and annotation with Snakemake. Ensure reproducibility and reliability in genomic studies.

Language: HTML - Size: 1.08 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

OrangePomeranian/Spatial_Analysis

This project conducts spatial analysis on lung cancer tissue using Scanpy and data from 10x Genomics, focusing on preprocessing, quality control, and functional analysis of spatially variable genes. Insights into the molecular heterogeneity of lung cancer are uncovered, highlighting regions of interest for further research.

Language: Jupyter Notebook - Size: 41.9 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

OrangePomeranian/ChiP-seq

This project explores the PBRM1-PIAS1 interaction in epithelial differentiation through ChIP-seq analysis, highlighting EZH2's role and implications for cholesterol biosynthesis in cellular processes.

Language: Jupyter Notebook - Size: 4.22 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

OrangePomeranian/Quantitative_Genetics

Language: R - Size: 779 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

OrangePomeranian/Population_Genetics

Analyzing genetic variation and selection in three-spined stickleback populations, these projects apply statistical and evolutionary genomic analyses to understand environmental influences and identify outlier SNPs, highlighting the interplay between natural selection and population differentiation.

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OrangePomeranian/Evolutionary_Genetics

Investigating HIV subtype evolution through maximum-likelihood and GTR model analysis, focusing on clade formation and genetic diversity. Utilizing BEAST for HIV-1 sequence analysis to estimate evolutionary rates and MRCA, highlighting subtype diversification.

Language: R - Size: 11 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

OrangePomeranian/TF_CNN

The aim of this project was to create a classification model for patients with suspected brain tumour development based on MRI images with Keras and TensorFlow.

Language: Python - Size: 147 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

OrangePomeranian/Python

Language: Jupyter Notebook - Size: 5.27 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

OrangePomeranian/HIV_phylogenetic_tree

Size: 213 KB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

OrangePomeranian/PCA

Language: R - Size: 26.6 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

OrangePomeranian/adult

The project focused on using Machine Learning (glm function on data Adult) in R. The goal of it was to develop a model that predicts a person's income (under 50k per year or over 50k per year).

Language: Jupyter Notebook - Size: 1.09 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

OrangePomeranian/genetics_of_population

Study of microsatellite sequences in the Red fox population

Size: 69.3 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

OrangePomeranian/genomics_project

Genomic Analysis of Canis lupus with the use of Genomic Maps and Philogenetic Trees

Size: 32.4 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

OrangePomeranian/LIMS_database

Project of Medical Database with the possibility of logging for users and adding new data to base

Language: PHP - Size: 14.1 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

OrangePomeranian/Bachelor_thesis

The performance of individual CNV detection software and state-of-the-art sequencing. All analyses were performed using the Python and R programming languages.

Language: Python - Size: 36.1 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

OrangePomeranian/Programy_Komputerowe

Translation of the FASTA file with genetic code into aminoacid code.

Language: Python - Size: 2.93 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

OrangePomeranian/Monte_Carlo

Estimation of the Shapiro-Wilk test using the Monte Carlo method.

Language: Python - Size: 6.87 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1

OrangePomeranian/Data_Visualisation

Here I commit my projects of data cleaning and (mostly) visualization in tools such as Excel, Power BI, and Tableau.

Size: 9.8 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

OrangePomeranian/Survival_Analysis

This project focuces on analysis of survival patients with Aids, with Python library Lifelines

Language: Jupyter Notebook - Size: 129 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

OrangePomeranian/Weather_prediction

Language: Jupyter Notebook - Size: 370 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

OrangePomeranian/Social_data_analysis

Size: 1000 Bytes - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

OrangePomeranian/Analiza_Danych_projekt

Finding mutations in genomic data with the use of the chi2 test and Parallel functions in Python and R

Language: R - Size: 173 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

OrangePomeranian/Podstawy_statystycznego_modelowania_danych

Codes from Course The basics of Statistical Data Modelling

Language: Jupyter Notebook - Size: 1.86 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

OrangePomeranian/github-slideshow

A robot powered training repository :robot:

Language: Ruby - Size: 3.36 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0