PathwayAndDataAnalysis/causalpath

A project for exploring differentially active signaling paths related to proteomics datasets

Language: Java - Size: 12.6 MB - Last synced at: 20 days ago - Pushed at: 21 days ago - Stars: 41 - Forks: 11

PathwayAndDataAnalysis/TF-Prediction-Webserver

Language: Python - Size: 114 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/misc2

misc is dead! long live the misc2

Language: Java - Size: 150 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

PathwayAndDataAnalysis/resource

Collection of code for accessing several data resources.

Language: Java - Size: 453 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 1

PathwayAndDataAnalysis/utility

Contains code that is often shared by many projects.

Language: Java - Size: 227 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 2

PathwayAndDataAnalysis/TF-Analysis

Language: Jupyter Notebook - Size: 9.49 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/gsplot

Gene set viewer

Language: HTML - Size: 149 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/repo

Repository for maven jars and other resources.

Size: 576 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/causalpath-newt-webserver

Language: JavaScript - Size: 142 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

PathwayAndDataAnalysis/RNAToProtein

A linear regression framework for predicting proteomic values from transcriptomic data.

Size: 15.6 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/single-cell-pathway-analysis

A webserver for pathway analysis of single cell trajectories

Language: Python - Size: 14.2 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/misc

Collection of several basic code

Language: Java - Size: 342 KB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/causality

Automatically exported from code.google.com/p/causality

Language: Java - Size: 9.19 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1

PathwayAndDataAnalysis/mutex

Automatically exported from code.google.com/p/mutex

Language: Java - Size: 2.84 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 10 - Forks: 5

PathwayAndDataAnalysis/firehose-parser

A parser for Broad Firehose

Language: Jupyter Notebook - Size: 38.1 KB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/cytoscape.js Fork of iVis-at-Bilkent/cytoscape.js

Graph theory (a.k.a. network) library for analysis and visualisation (compatible with CommonJS/Node.js/Browserify/Webpack, AMD/Require.js, npm, Bower, jspm, Meteor/Atmosphere, jQuery, and plain JS/JavaScript)

Language: JavaScript - Size: 149 MB - Last synced at: about 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/cancer-network

For generating a network that shows the relations of the observed gene alterations in a cancer patient to the known cancer genes or other custom gene sets.

Language: Java - Size: 23.4 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/tf-activity

For inferring differential transcription factor activity using RNA expression data and transcriptional network.

Language: Java - Size: 18.6 KB - Last synced at: about 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/mutex-de-novo

Mutual exclusivity analysis developed for de novo mutations in autism datasets.

Language: Java - Size: 89.8 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

PathwayAndDataAnalysis/causal-priors-extractor

This project extracts causal priors from Pathway Commons database to use in CausalPath.

Language: Java - Size: 30.3 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/protein-site-motif

This project aims to identify motifs in protein phosphorylation sites.

Language: Java - Size: 27.3 KB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/frext-to-biopax

Convertor from REACH frext format to BioPAX

Language: Java - Size: 1.08 MB - Last synced at: about 1 year ago - Pushed at: about 7 years ago - Stars: 1 - Forks: 0

PathwayAndDataAnalysis/misc-helpers

Several miscellaneous python code for data processing and analysis.

Language: Jupyter Notebook - Size: 55.4 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/cptac-gbm-survival-signature

In this analysis, we check if the survival transcriptomic signature in TCGA GBM cohort is also visible in the CPTAC GBM cohort.

Size: 18.3 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/mutation-patterns

For detecting potentially cancer-driver mutations based on their distribution compared to other genomic profiles.

Size: 2.93 KB - Last synced at: about 1 year ago - Pushed at: about 9 years ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/modulators

For discovering and classifying modulators of gene expression

Language: Java - Size: 26.4 KB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/TrajectoryAndDistanceAnalysis

Language: R - Size: 48.8 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/single-cell-pathway-analysis-client

Language: JavaScript - Size: 1.59 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/sif-explorer

A web service for graph theoretic exploration of SIF networks.

Size: 10.7 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

PathwayAndDataAnalysis/causalpath-webserver

Web Server for CausalPath

Language: CSS - Size: 169 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 2

PathwayAndDataAnalysis/Finkle-PHYS-479

Language: Python - Size: 2.7 MB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 1