ProjectDebbie/DEBBIE_pipeline

A pipeline for the extraction of information about biomaterials from PubMed abstracts into a MongoDB collection

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ProjectDebbie/polydioxanone_project

Applying text analysis and annotation pipeline to the polydioxanone literature

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ProjectDebbie/DEBBIE_dictionaries_annotations

Component of the Biomaterials Annotator that maps terms from dictionaries

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ProjectDebbie/pubmed_standardization

A component to convert the format from pubmed into the input format of the classifier

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ProjectDebbie/ProjectDebbie.github.io

Project DEBBIE pages

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ProjectDebbie/Biomaterials_annotated_corpus

Gold standard of biomaterials and biocompatibility literature annotated by the Biomaterials Annotator

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ProjectDebbie/background_set

PMIDs of non-relevant articles to use for filtration

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ProjectDebbie/OWL2DICT

A tool for converting owl ontologies to a dictionary object with user-selected classes

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ProjectDebbie/gate_to_json

Language: Java - Size: 61.5 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

ProjectDebbie/Biomaterials_annotator

A lexical instrument to annotate biomaterials text

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ProjectDebbie/pubmed_retrieval

python code to rertieve abstracts from pubmed

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ProjectDebbie/gold_standard_set

PMIDs of the gold standard set for 'biocompatibility'

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ProjectDebbie/Classifier

SVM classifier pre-trained on biomaterials abstracts

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ProjectDebbie/Ontology_DEB

The Device, Experimental scaffolds and medical Device ontology (DEB)

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ProjectDebbie/Decade_of_biomaterials

Language: Jupyter Notebook - Size: 22.5 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

ProjectDebbie/Multinomial_classifier

Language: Python - Size: 25.2 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

ProjectDebbie/mesh_tag_extractor

Extracts mesh tags from medline files

Language: Python - Size: 32.2 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0