SFB-ELAINE/OSS-DBSv2

Open-Source Simulation platform for Deep Brain Stimulation

Language: Python - Size: 13.6 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 2 - Forks: 2

SFB-ELAINE/SI_lengthOfPrimaryCilia

Supporting infomation to "Influence of cultivation methods on the lengths of primary cilia"

Language: R - Size: 3.21 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

SFB-ELAINE/oscilloscopeR

R package to work with oscilloscope recordings.

Language: R - Size: 66.4 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

SFB-ELAINE/SI_Short_Stim

Supporting information for publication on short-term stimulation of neural progenitor cells

Language: R - Size: 19.5 KB - Last synced: 5 months ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0

SFB-ELAINE/SI_Short_Stim_MG63

Supporting information for publication on short-term stimulation of MG-63 cells

Language: R - Size: 11.5 MB - Last synced: 5 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

SFB-ELAINE/SI_LRP6_Endocytosis_Model

Supporting information for paper by Haack, Budde, Uhrmacher (doi: 10.1242/jcs.243675).

Language: Scala - Size: 108 KB - Last synced: 5 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0

SFB-ELAINE/stackImages

R Package to stack confocal microscopy tiff images

Language: R - Size: 18.6 KB - Last synced: 5 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/SI_Staehlke_MDPI_Cells

Supporting information for paper by Staehlke et al. 2020

Language: R - Size: 46.9 KB - Last synced: 5 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/imageSummaRy

R package to summarize (pixel) information of a tiff-image

Language: R - Size: 49.8 KB - Last synced: 5 months ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

SFB-ELAINE/ImageJPlugin_Count_and_measure

Plugin for ImageJ to count and measure cells

Language: Java - Size: 1.44 MB - Last synced: 5 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/SI_Provenance_Wnt_Family

Supporting information for publication by Budde et al. (2021)

Language: R - Size: 14.3 MB - Last synced: 5 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/imageInformation

Language: R - Size: 18.6 KB - Last synced: 5 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/cellPixels

R package for statistics of fluorescence microscopy images

Language: R - Size: 351 KB - Last synced: 5 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

SFB-ELAINE/readCzi

readCzi is an R package to read Carl Zeiss Image (CZI) files, convert them to tifs and store metadata

Language: R - Size: 66 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 3 - Forks: 1

SFB-ELAINE/OSS-DBS

Open-Source Simulation platform for Deep Brain Stimulation

Language: Python - Size: 233 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 18 - Forks: 3

SFB-ELAINE/Case-Study-Neurostimulator

Models, generated experiments, and data for the neurostimulator case study of the paper "Making Simulation Experiments Explicit and Accessible using Experiment Schemas"

Language: Python - Size: 5.86 KB - Last synced: 10 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/ckanext-paraview 📦

CKAN extension using ParaViewWeb Visualizer to add resource views for STL and VTK files.

Language: Python - Size: 48.8 KB - Last synced: over 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/INF-Dockerfiles

This is a collection of Dockerfiles used in the CRC ELAINE

Language: Dockerfile - Size: 11.7 KB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

SFB-ELAINE/detectCilia

R package to detect cilia and other colored structures in confocal fluorescence microscopy images

Language: R - Size: 17 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 0

SFB-ELAINE/Ca-imaging-RO-Crate

RO-Crate bundles from Calcium Imaging experiments including research data and their retrospective provenance

Language: HTML - Size: 917 MB - Last synced: over 1 year ago - Pushed: about 2 years ago - Stars: 2 - Forks: 1

SFB-ELAINE/WebProv

Online Provenance Tool for Simulation Models

Language: Vue - Size: 5.24 MB - Last synced: 5 months ago - Pushed: over 1 year ago - Stars: 3 - Forks: 4

SFB-ELAINE/Structure-based-ELN2LOD Fork of m6121/Structure-based-ELN2LOD

Prototype translating ELN protocols into RO-Crate bundles including the research data and a retrospective provenance representation

Language: Python - Size: 19.5 KB - Last synced: over 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/STELLA

Language: C - Size: 85.2 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

SFB-ELAINE/Semantic-Modelling-CA-Imaging Fork of m6121/Semantic-Modelling-CA-Imaging

This repository contains the semantic model of an Electronic Lab Notebook (ELN) protocols of a Calcium Imaging study.

Size: 413 KB - Last synced: over 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/Case-Study-Endocytosis

Models, generated experiments, and data for the endocytosis case study of the paper "Making Simulation Experiments Explicit and Accessible using Experiment Schemas""

Language: R - Size: 145 KB - Last synced: 5 months ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

SFB-ELAINE/elabftw Fork of elabftw/elabftw

:notebook: Lab manager, experiment notebook, database for research labs

Language: PHP - Size: 185 MB - Last synced: over 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/elabapy Fork of elabftw/elabapy

Python package to interact with eLabFTW's API

Size: 66.4 KB - Last synced: over 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/elabimg Fork of elabftw/elabimg

elabftw in a docker container

Language: HTML - Size: 1.39 MB - Last synced: over 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/Cartilage_electromechanics Fork of arfarooqi/Cartilage_electromechanics

Python script for the manuscript_____Farooqi, A.R.; Bader, R.; van Rienen, U. Numerical Study on Electromechanics in Cartilage Tissue with Respect to Its Electrical Properties. Tissue Eng. Part B Rev. 2019, 25, 152–166. doi:10.1089/ten.teb.2018.0214.

Language: Python - Size: 27.3 KB - Last synced: over 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/Electro-active-hydrogels Fork of arfarooqi/Electro-active-hydrogels

Python script for the manuscript_____Farooqi, A.R.; Zimmermann, J.; Bader, R.; van Rienen, U. Numerical simulation of electro-active hydrogels for cartilage tissue engineering. Materials 2019, 12(18), 2913; https://doi.org/10.3390/ma12182913.

Language: Python - Size: 37.1 KB - Last synced: over 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/rdmo Fork of rdmorganiser/rdmo

A tool to support the planning, implementation, and organization of research data management.

Language: Python - Size: 7.49 MB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/ckanext-ldap Fork of NaturalHistoryMuseum/ckanext-ldap

CKAN plugin to provide LDAP authentication

Language: Python - Size: 144 KB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/elabdoc Fork of elabftw/elabdoc

Source files for generating documentation for elabftw

Size: 2.28 MB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/vocol Fork of vocol/vocol

An integrated environment to support collaborative ontology / vocabulary development in distributed settings

Size: 358 MB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/docker-SemanticMediaWiki Fork of toniher/docker-SemanticMediaWiki

Repository for playing with Docker and Semantic MediaWiki

Size: 82 KB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/PROV-Bio-electric-Systems

A Collection of W3C PROVenance Model for the Numerical Modelling and Finite Element Simulation Processes of Bio-electric Systems

Language: Jupyter Notebook - Size: 164 KB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/Biomedical-Jupyter-Examples

This repository encodes a biomedical research analysis as reproducible and executable Jupyter Notebooks in various programming languages.

Language: Jupyter Notebook - Size: 5.62 MB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 2

SFB-ELAINE/icinga2 Fork of jjethwa/icinga2

Language: Shell - Size: 214 KB - Last synced: over 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/datapusher Fork of clementmouchet/datapusher

A standalone service that automatically migrates data to the CKAN DataStore

Language: Python - Size: 670 KB - Last synced: over 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/ckanext-vtkjs

A CKAN extension to provide views for STL and VTK files.

Language: JavaScript - Size: 2.06 MB - Last synced: over 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/ckanext-papaya

CKAN extension using Papaya viewer to provide views for DICOM and NIFTI files.

Language: Python - Size: 531 KB - Last synced: over 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/prov-check Fork of pgroth/prov-check

Making sure your provenance is all good

Language: Python - Size: 14.6 KB - Last synced: over 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/rdmo-docker-compose Fork of rdmorganiser/rdmo-docker-compose

RDMO running in different docker images held together by docker compose

Language: Python - Size: 83 KB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/ckanext-pdfview Fork of hayley-leblanc/ckanext-pdfview

PDF viewer for CKAN >= 2.3

Language: HTML - Size: 2.92 MB - Last synced: over 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/Sessl2R

R package to work with output files from SESSL

Language: R - Size: 19.5 KB - Last synced: 5 months ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

SFB-ELAINE/ckanext-elaine_theme

A theme for the SFB ELAINE instance of a CKAN data repository

Language: Python - Size: 33.2 KB - Last synced: over 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/ckan Fork of ckan/ckan

CKAN is an open-source DMS (data management system) for powering data hubs and data portals. CKAN makes it easy to publish, share and use data. It powers datahub.io, catalog.data.gov and europeandataportal.eu/data/en/dataset among many other sites.

Language: Python - Size: 143 MB - Last synced: over 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/ckanext-disablepwreset

A CKAN extension disbaling the passwort reset functionality

Language: Python - Size: 27.3 KB - Last synced: over 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/ckanext-dwgviewer Fork of TIBHannover/ckanext-dwgviewer

A drawing (AutoCAD) file viewer for ckan

Language: Python - Size: 17.6 KB - Last synced: over 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/ckanext-videoviewer Fork of TIBHannover/ckanext-videoviewer

A video Viewer extension for ckan

Language: Python - Size: 17.6 KB - Last synced: over 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/EMStimTools Fork of j-zimmermann/EMStimTools

Language: Python - Size: 556 KB - Last synced: over 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

SFB-ELAINE/ckanext-privatedatasets Fork of conwetlab/ckanext-privatedatasets

CKAN extension that allows a user to create private datasets only visible to certain users. The extension provides also an API to specify which users can access private datasets

Language: Python - Size: 1.36 MB - Last synced: over 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0