SydneyBioX/SpatialFeatures

An R package to extract features from singcell spatial genomics

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SydneyBioX/MoleculeExperiment

Language: R - Size: 29.9 MB - Last synced: 28 days ago - Pushed: about 2 months ago - Stars: 11 - Forks: 0

SydneyBioX/wSIR

Weighted Sliced Inverse Regression for spatial omics data analysis

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SydneyBioX/simpleSeg

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SydneyBioX/StabMap

Mosaic single cell data integration using non-overlapping features

Language: R - Size: 1.83 MB - Last synced: 12 days ago - Pushed: 12 days ago - Stars: 0 - Forks: 0

SydneyBioX/spicyR

Language: R - Size: 23.9 MB - Last synced: 12 days ago - Pushed: 13 days ago - Stars: 8 - Forks: 4

SydneyBioX/scMerge

Statistical approach for removing unwanted variation from multiple single-cell datasets

Language: R - Size: 128 MB - Last synced: 20 days ago - Pushed: about 2 months ago - Stars: 62 - Forks: 13

SydneyBioX/ClassifyR Fork of DarioS/ClassifyR

A framework for cross-validated classification problems, with applications to differential variability and differential distribution testing

Language: R - Size: 12.2 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 3

SydneyBioX/Unlocking-single-cell-spatial-omics-analyses-with-SCDNEY

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SydneyBioX/Diabetic-ischaemic-cardiomyopathy

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SydneyBioX/clustSIGNAL

clustering of Spatially Informed Gene expression with Neighbourhood Adapted Learning

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SydneyBioX/scdney

Language: TeX - Size: 11.3 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 2 - Forks: 0

SydneyBioX/StabMap_workshop24

Materials for 2024 workshop using StabMap for single cell and spatial itnegration

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SydneyBioX/CiteFuse

CiteFuse:

Language: R - Size: 105 MB - Last synced: 3 months ago - Pushed: over 1 year ago - Stars: 26 - Forks: 5

SydneyBioX/SpatialUtils

Utility functions for spatial omics data

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SydneyBioX/SimBench

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SydneyBioX/ktss_exact

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SydneyBioX/KTSS

Size: 12.6 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

SydneyBioX/BIDCell

Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data

Language: Python - Size: 24.4 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 12 - Forks: 3

SydneyBioX/scFeatures

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SydneyBioX/sc_bench_benchmark

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SydneyBioX/TOP Fork of Harry25R/TOP

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SydneyBioX/SimBenchData

Language: R - Size: 65.4 KB - Last synced: 6 months ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

SydneyBioX/TrainClassifyR

Data and slides for ClassifyR workshop at Bioconductor Symposium

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SydneyBioX/tidy2019_day1

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SydneyBioX/WholeGenomeDNA

A set of scripts to process whole genome sequencing DNA data on a PBS Cluster

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SydneyBioX/SingleCellsChallenge2019

Website for Challenge

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SydneyBioX/scREMOTE

scREMOTE: a single cell REprogramming Model Through CREs

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SydneyBioX/SC_CPC_workshop

CPC Single Cell Workshop, 04 Nov 2019

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SydneyBioX/scdneyDiseasePrediction

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SydneyBioX/scClustBench Fork of taiyunkim/scClustBench

Impacts of similarity metrics on scRNA-seq

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SydneyBioX/scdneyAdvancedPhenotyping

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SydneyBioX/scClassify_analysis

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SydneyBioX/RNASeq

Pipelines for processing RNASeq and scRNAseq data

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SydneyBioX/BioHEART_metabolomics

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SydneyBioX/BiocAsia2020CiteFuse

Language: Dockerfile - Size: 17.4 MB - Last synced: 6 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

SydneyBioX/BIS2019_PhosR

PhosR workshop

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SydneyBioX/cornell_sc_workshop

Single Cell Analysis Workshop at Cornell University

Language: HTML - Size: 26.1 MB - Last synced: 6 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 1

SydneyBioX/BIS2019_IntroUnix

Bioinfosummer 2019 Unix workshop

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SydneyBioX/MultiP

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SydneyBioX/localWorkshop

Workshop Slides and Website for Cross-validated Classification Workshop Held on 29 June 2018 in Sydney

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SydneyBioX/CPOP_public Fork of kevinwang09/CPOP_public

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SydneyBioX/KidneyAllocationProcess

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SydneyBioX/EMBLworkshop2018

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SydneyBioX/hRUV

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SydneyBioX/CPOP Fork of kevinwang09/CPOP

Language: R - Size: 10.8 MB - Last synced: 6 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

SydneyBioX/COVID_CCI_analysis

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SydneyBioX/.github

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SydneyBioX/scJoint

Language: Jupyter Notebook - Size: 172 MB - Last synced: 6 months ago - Pushed: 11 months ago - Stars: 54 - Forks: 15

SydneyBioX/ScdneySpatial

Spatial omics workshop using scdney

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SydneyBioX/Statial

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SydneyBioX/scClassify

Hierarchical classification of cells

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SydneyBioX/scReClassify

Post hoc cell type classification of single-cell RNA-sequencing data.

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SydneyBioX/scDC

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SydneyBioX/SurvBenchmark

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SydneyBioX/lisaClust

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SydneyBioX/Review_sc_benchmark_evaluation

Review on single cell benchmarking evaluation

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SydneyBioX/BiocAsia2023

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SydneyBioX/SCDNEY-Unlocking-insights-for-single-cell-and-spatial-data-with-scFeatures

BioconductorAsiaSymposium2023

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SydneyBioX/ClassifyR3analytics

Analyses for best practices guide to ClassifyR multi-view modelling

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SydneyBioX/SpatialDatasets

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SydneyBioX/packageHeader

Headers for package vignettes

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SydneyBioX/Spatial

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SydneyBioX/spicy

Size: 340 KB - Last synced: 6 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

SydneyBioX/StatialBioc2023

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SydneyBioX/scdneySpatialOmics_CPC23

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SydneyBioX/scTIE

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SydneyBioX/scdneySpatialOmics_BIS22

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SydneyBioX/spicyWorkflow

Perform spatial analysis of in situ cytometry data in R

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SydneyBioX/eNODAL

eNODAL package

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SydneyBioX/SydneyBioXStickers

A repo for storing all the pretty SydneyBioX stickers.

Size: 12.8 MB - Last synced: 6 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

SydneyBioX/CellSPA

Cell Segmentation Performance Assessment

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SydneyBioX/NEMoE_MS

Figures in Manscript of NEMoE

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SydneyBioX/CiteFuse2020Kim

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SydneyBioX/SurvBenchmark_package

Language: R - Size: 45.3 MB - Last synced: 6 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 1

SydneyBioX/NEMoE

Regularized Mixture of Experts Model

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SydneyBioX/PD16SData

11 processed 16S Gut Microbiome Parkinson's disease

Language: R - Size: 8.96 MB - Last synced: 6 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

SydneyBioX/simKAP

Language: R - Size: 23.9 MB - Last synced: 6 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

SydneyBioX/BIS2019_SC

Single-Cell RNA-Seq workshop, Bioinformatics Summer 2019

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SydneyBioX/microbiome-PD

Microbiome Parkinson study

Language: R - Size: 961 KB - Last synced: 6 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 2

SydneyBioX/LCN2G

Language: R - Size: 24.5 MB - Last synced: 6 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 1

SydneyBioX/tidy2019

Tidyverse workshop at BioinfoSummer 2019

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SydneyBioX/SingleCellPlus

A joint scRNASeq workshop by USYD and HKU

Language: HTML - Size: 223 MB - Last synced: 6 months ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

SydneyBioX/scMerge.data

A data package for scMerge

Language: R - Size: 35.2 MB - Last synced: 6 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0