USDA-VS/Flumina Fork of flu-crew/Flumina

A pipeline for the analysis of Illumina sequence data from Influenza viruses

Language: R - Size: 174 MB - Last synced: about 9 hours ago - Pushed: about 10 hours ago - Stars: 0 - Forks: 0

USDA-VS/vSNP3

vSNP -- validate SNPs

Language: Python - Size: 5.34 MB - Last synced: 12 days ago - Pushed: 13 days ago - Stars: 2 - Forks: 1

USDA-VS/GenoFLU

Influenza data pipeline to automate genotyping assignment

Language: Python - Size: 178 KB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 10 - Forks: 1

USDA-VS/vSNP

vSNP -- validate SNPs

Language: Python - Size: 68.5 MB - Last synced: 10 days ago - Pushed: over 1 year ago - Stars: 19 - Forks: 12

USDA-VS/nvsl_bioinformatic_training

The NVSL Bioinformatics Workshop will feature training on command-line bioinformatic tools, processes, and resources routinely used at NVSL for diagnostic testing.

Language: HTML - Size: 20 MB - Last synced: 28 days ago - Pushed: 29 days ago - Stars: 0 - Forks: 0

USDA-VS/vsnp3_test_dataset

Dataset for testing vSNP version 3 installation

Size: 115 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

USDA-VS/NAHLN_AMR

Language: Python - Size: 145 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

USDA-VS/vSNP_reference_options

vSNP supporting files

Size: 63.8 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

USDA-VS/minimum_fastqs

testing files: smallest file size and still complete through vSNP_step1.py

Size: 118 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

USDA-VS/vSNP_archive

Archived versions of vSNP

Language: Python - Size: 62.4 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

USDA-VS/vcf_test_files

A small set of VCFs with expected output tables for script testing

Size: 1.87 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

USDA-VS/fastq_data_set-brucella

Brucella FASTQ test files

Size: 297 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

USDA-VS/fastq_data_set-tb_complex

Size: 337 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0