bencardoen/resources

Common resources used in scientific writing

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bencardoen/singularity_slurm_cuda

Example on how to get started with Singularity and CUDA on a SLURM cluster

Language: Shell - Size: 214 KB - Last synced at: 28 days ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 0

bencardoen/Colocalization.jl

Colocalization metrics and distances for images or their sparse representations.

Language: Julia - Size: 286 KB - Last synced at: 2 days ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

bencardoen/SubPrecisionContactDetection.jl

A Julia package to detect contacts below the precision of a superresolution microscope between 2 subcellular organelles in 2-channel superresolution (STED) microscopy.

Language: Julia - Size: 3.14 MB - Last synced at: 2 days ago - Pushed at: 10 months ago - Stars: 3 - Forks: 0

bencardoen/SPECHT.jl

SPECHT is a Julia implementation of a contrastive weakly supervised object detection and identification method for fluorescence microscopy.

Language: Julia - Size: 10.4 MB - Last synced at: 4 months ago - Pushed at: 9 months ago - Stars: 4 - Forks: 0

bencardoen/DataCurator.jl

A scalable Julia package to transparently validate and transform large biomedical datasets using human readable recipes that are translated to machine verifiable templates.

Language: Julia - Size: 52.6 MB - Last synced at: 2 months ago - Pushed at: 11 months ago - Stars: 7 - Forks: 1

bencardoen/singularity_julia

Template definition file for Singularity RO containers with Julia and user package embedded.

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bencardoen/devs-ex-machina

A PDEVS C++ parallel simulator. supporting multiple synchronization paradigms

Language: C++ - Size: 57.2 MB - Last synced at: 5 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

bencardoen/tutorials Fork of jeremykawahara/tutorials

tutorials

Language: Jupyter Notebook - Size: 223 KB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

bencardoen/deep_loco Fork of nboyd/deep_loco

sample implementation of deeploco

Language: Python - Size: 9.91 MB - Last synced at: about 2 years ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0

bencardoen/clusim Fork of Hoosier-Clusters/clusim

An extended package for clustering similarity

Language: Python - Size: 3.81 MB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0

bencardoen/testm1

Size: 1000 Bytes - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

bencardoen/testccimac

Size: 23.4 KB - Last synced at: 5 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

bencardoen/SmlmTools.jl

Computational tools for single molecule localization / superresolution microscopy (point clouds).

Language: Julia - Size: 58.2 MB - Last synced at: 5 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

bencardoen/bhattacharyya_distance

Language: Jupyter Notebook - Size: 63.5 KB - Last synced at: 5 months ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0

bencardoen/SlurmMonitor.jl

A monitor for SLURM HPC schedulers that notifies on preset conditions (downtime, latency) and connects to Slack (optional)

Language: Julia - Size: 113 KB - Last synced at: 5 months ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

bencardoen/ERGO

ERGO: Efficient Recurrent Graph Optimized Emitter Density Estimation in Single Molecule Localization Microscopy

Size: 2.93 MB - Last synced at: 5 months ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

bencardoen/smlmvis

Superresolution visualization of 3D protein localization data from a range of microscopes

Language: Jupyter Notebook - Size: 12.8 MB - Last synced at: 4 months ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 0

bencardoen/ERGO.jl

Object / density detection in astigmatic superresolution dSTORM microscopy

Language: Jupyter Notebook - Size: 17.3 MB - Last synced at: 3 months ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

bencardoen/labtools

Set of utility scripts to ease remote mounting / ssh / data sync etc

Language: Shell - Size: 52.7 KB - Last synced at: 5 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

bencardoen/ERGO.py

Language: Python - Size: 33.2 MB - Last synced at: 5 months ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

bencardoen/paper_reviews

Language: Python - Size: 343 KB - Last synced at: 2 months ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

bencardoen/lab_tools

Language: Shell - Size: 26.4 KB - Last synced at: 5 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

bencardoen/imaris_reader

Language: Jupyter Notebook - Size: 22.5 KB - Last synced at: 5 months ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 2

bencardoen/cedartutorial

Tips on how to leverage Compute Canada's HPC (Cedar) in your research.

Language: Jupyter Notebook - Size: 771 KB - Last synced at: 5 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

bencardoen/launchjobs

Python script that runs arbitrary shell commands in parallel (for cluster/SLURM) usage

Language: Jupyter Notebook - Size: 20.5 KB - Last synced at: 2 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

bencardoen/nbr

Language: Jupyter Notebook - Size: 882 KB - Last synced at: 5 months ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0

bencardoen/sciparpy

Language: Jupyter Notebook - Size: 1.15 MB - Last synced at: 5 months ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0

bencardoen/srm_threshold

Language: Jupyter Notebook - Size: 4.62 MB - Last synced at: 24 days ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

bencardoen/graph_course_presentation

Language: Jupyter Notebook - Size: 726 KB - Last synced at: 1 day ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

bencardoen/srm_model

Language: Jupyter Notebook - Size: 807 KB - Last synced at: 5 months ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

bencardoen/julianotes

Language: Jupyter Notebook - Size: 12.7 KB - Last synced at: 13 days ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0