bfrgoncalves/INNUENDO_schemas

repository for the INNUENDO chewbbaca schemas

Size: 0 Bytes - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 2

bfrgoncalves/INNUENDO_docker

Docker-compose for INNUENDO Platform deployment

Language: Shell - Size: 818 KB - Last synced: 7 months ago - Pushed: about 5 years ago - Stars: 3 - Forks: 8

bfrgoncalves/find_BRIG_gaps

This program searches for alignment gaps in the scratch .tab files given as output of the BRIG software. BLAST hits on those files are ordered and then regions from the reference without coverage are classified as Gaps.

Language: Python - Size: 6.21 MB - Last synced: 7 months ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

bfrgoncalves/INNUENDO_REST_API

Frontend application and REST API for the INNUENDO Platform

Language: JavaScript - Size: 16.7 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 5 - Forks: 5

bfrgoncalves/patlas-compose

repository for patlas docker-compose recipe

Language: Dockerfile - Size: 18.6 KB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 1 - Forks: 1

bfrgoncalves/NeighbourGenes

This program checks for the neighbor genes by syncing and downloading files from ftp://ftp.ncbi.nlm.nih.gov/genomes/Bacteria/ and by peeforming BLASTp searches.

Language: Python - Size: 2.72 MB - Last synced: 7 months ago - Pushed: about 9 years ago - Stars: 0 - Forks: 0

bfrgoncalves/missingData

Language: Python - Size: 2.93 KB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

bfrgoncalves/phyloviz_graph

Language: JavaScript - Size: 3.53 MB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 2 - Forks: 0

bfrgoncalves/Online-PhyloViZ

Language: JavaScript - Size: 87.4 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 23 - Forks: 11

bfrgoncalves/filter_files_by_table_columns

Language: Python - Size: 40 KB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

bfrgoncalves/sequence_parsers

Language: Python - Size: 3.35 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

bfrgoncalves/mutational-signature-nf Fork of lifebit-ai/mutational-signature-nf

Size: 2.78 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

bfrgoncalves/rnatoy Fork of lifebit-ai/rnatoy

A proof of concept RNA-Seq pipeline with Nextflow

Language: Python - Size: 810 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

bfrgoncalves/data-downloader Fork of PhilPalmer/data-downloader

Nextflow pipeline to download files using axel

Language: Nextflow - Size: 2.93 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

bfrgoncalves/phylovizOnline-compose

Language: Dockerfile - Size: 20.5 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 2 - Forks: 0

bfrgoncalves/INNUENDO_PROCESS_CONTROLLER

INNUENDO Process controller source code wiht integration with Nextflow

Language: Python - Size: 420 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 4

bfrgoncalves/boxPlot_from_matrix

Language: Python - Size: 6.84 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 1

bfrgoncalves/INSaFLU_compose

Docker-compose version of the INSaFLU platform

Language: Dockerfile - Size: 17.6 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

bfrgoncalves/ANI_Calculator

This program performs a given ANI method (ANIb or ANIm) on a set of input files or downloads a group of files by syncronizing to ftp://ftp.ncbi.nlm.nih.gov/genomes/Bacteria/ and by searching for the DOWNLOADTOKEN

Language: Python - Size: 15.6 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 1

bfrgoncalves/INNUENDO_files

files required for innuendo configuration

Size: 13.7 KB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

bfrgoncalves/EnteroMSTree Fork of achtman-lab/GrapeTree

Language: HTML - Size: 2.48 MB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

bfrgoncalves/Bi_Calculator

Belonging Index Calculator

Language: HTML - Size: 9.1 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

bfrgoncalves/pATLAS Fork of tiagofilipe12/pATLAS

Plasmid Atlas

Language: JavaScript - Size: 8.52 MB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

bfrgoncalves/hackathon_Bath

Size: 0 Bytes - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

bfrgoncalves/ReMatCh Fork of B-UMMI/ReMatCh

Reads mapping against target sequences, checking mapping and consensus sequences production

Language: C - Size: 38.2 MB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

bfrgoncalves/profile_statistics

Program that compares allelic profiles and returns similar and different loci

Size: 0 Bytes - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

bfrgoncalves/msa Fork of wilzbach/msa

Modular BioJS compoment for a multiple sequence alignment

Language: JavaScript - Size: 2.2 MB - Last synced: about 1 year ago - Pushed: almost 8 years ago - Stars: 0 - Forks: 0

bfrgoncalves/profile_tab_to_fasta

This program converts a profile tab delimited file to a fasta file with the sequences of the profiles

Language: Python - Size: 0 Bytes - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 0 - Forks: 0

bfrgoncalves/coreaccviz

Size: 0 Bytes - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 0 - Forks: 0

bfrgoncalves/schedule_app

Language: JavaScript - Size: 11.2 MB - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 0 - Forks: 0

bfrgoncalves/orderContigs_Nucmer

This program performs a NUCmer alignment of a set of query sequence files (.fasta) against a reference and returns a set of files with the contigs ordered, in a .tab format.

Language: Python - Size: 30.5 MB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 0 - Forks: 1

bfrgoncalves/test_pieCharts

Language: JavaScript - Size: 104 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

bfrgoncalves/add_file_identifier

Language: Python - Size: 129 KB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

bfrgoncalves/BSR_calculator

Language: Python - Size: 4.71 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

bfrgoncalves/new_ProGenViZ

Size: 117 KB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

bfrgoncalves/wgMLST_Representation

This program allows the visualization of results obtained from an wgMLST allele calling method.

Language: JavaScript - Size: 402 KB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

bfrgoncalves/Learning-WebGL

Some samples by the instructional video from Erick Moller

Language: HTML - Size: 1.32 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

bfrgoncalves/test_gh_pages

testing gh_pages

Language: JavaScript - Size: 570 KB - Last synced: about 1 year ago - Pushed: about 9 years ago - Stars: 0 - Forks: 0

bfrgoncalves/goeBURST

goeBURST

Size: 0 Bytes - Last synced: 7 months ago - Pushed: about 9 years ago - Stars: 0 - Forks: 0

bfrgoncalves/Allele_Calling

Language: Python - Size: 859 KB - Last synced: about 1 year ago - Pushed: about 9 years ago - Stars: 0 - Forks: 0

bfrgoncalves/Node.js-Stuff

Language: JavaScript - Size: 2.57 MB - Last synced: about 1 year ago - Pushed: about 9 years ago - Stars: 0 - Forks: 0

bfrgoncalves/BSRvsNucSimilarity

Plots the BSR and nucleotide similarity after n generations

Language: Python - Size: 152 KB - Last synced: about 1 year ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0

bfrgoncalves/Tese

Size: 0 Bytes - Last synced: about 1 year ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0