bridgedb/BridgeDb

The BridgeDb Library source code

Language: Java - Size: 32.6 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 27 - Forks: 21

bridgedb/tiwid

This is where identifiers die

Language: Python - Size: 584 KB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 4 - Forks: 3

bridgedb/docker

BridgeDb Docker

Language: Shell - Size: 9.07 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 5 - Forks: 4

bridgedb/bridgedb.github.io

Website of the BridgeDb project

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bridgedb/BridgeDbWebservice

BridgeDb Webservice

Language: Java - Size: 854 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 2

bridgedb/BridgeDb-Examples

Language: Java - Size: 43.9 KB - Last synced: about 2 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

bridgedb/datasources

Repository with the BridgeDb data source.

Language: Python - Size: 72.3 KB - Last synced: about 2 months ago - Pushed: 2 months ago - Stars: 3 - Forks: 8

bridgedb/create-bridgedb-genedb-config

Language: Shell - Size: 90.8 KB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 2

bridgedb/data

Repository to mimic the old data/gene_database/ API

Language: Groovy - Size: 133 KB - Last synced: about 2 months ago - Pushed: 8 months ago - Stars: 3 - Forks: 3

bridgedb/shiny

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bridgedb/BridgeDbR Fork of egonw/BridgeDbR

Bioconductor R package for BridgeDb

Language: R - Size: 8.46 MB - Last synced: 21 days ago - Pushed: 9 months ago - Stars: 4 - Forks: 3

bridgedb/bridgedb-webservice 📦

BridgeDb Webservice

Language: Java - Size: 3.38 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 1

bridgedb/nwo-hackathon-2023

Size: 44.9 KB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

bridgedb/create-nanomaterial-mappings

Language: Groovy - Size: 8.79 KB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

bridgedb/swagger

Swagger file for bridgedbwebservice

Language: HTML - Size: 1.03 MB - Last synced: about 2 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 3

bridgedb/create-bridgedb-metabolites Fork of egonw/create-bridgedb-metabolites

Create BridgeDb identity mapping files from HMDB, ChEBI, and Wikidata

Language: Groovy - Size: 4.06 MB - Last synced: about 2 months ago - Pushed: about 1 year ago - Stars: 4 - Forks: 4

bridgedb/create-bridgedb-genedb Fork of JonathanMELIUS/BioMartScript

Example of script to query BioMart, parse and create a BridgeDb database

Language: Java - Size: 21.2 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago - Stars: 4 - Forks: 3

bridgedb/webservice.biomart

Biomart webservice plugin from org.bridgedb.webservice.biomart

Language: Java - Size: 70.3 KB - Last synced: about 2 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

bridgedb/webservice.bridgerest

Language: Java - Size: 49.8 KB - Last synced: about 2 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

bridgedb/create-bridgedb-secondary2primary Fork of sec2pri/mapping_preprocessing

Size: 31.2 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

bridgedb/InteractionDB

A BridgeDb Derby database to map interactions from different databases to each other. This database can be used to annotate interactions in PathVisio and Wikipathways.

Language: Java - Size: 39.3 MB - Last synced: about 2 months ago - Pushed: about 2 years ago - Stars: 2 - Forks: 2

bridgedb/stories

BridgeDb Stories explain the various uses cases

Size: 6.84 KB - Last synced: about 2 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 4

bridgedb/Wikidata2Bridgedb

Creation of BridgeDb mapping databases from Wikidata

Language: Java - Size: 139 KB - Last synced: about 2 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 2

bridgedb/BridgeDb-matlab Fork of lucas-ubm/BridgeDb-matlab

Functions to use the BridgeDb webservice in Matlab. BridgeDb is a tool for identifier mapping.

Language: Python - Size: 60.5 KB - Last synced: about 2 months ago - Pushed: about 2 years ago - Stars: 1 - Forks: 2

bridgedb/configManagement

Config management for BridgeDb

Language: Perl - Size: 10.7 KB - Last synced: about 2 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

bridgedb/bridgedbjs

JS client for BridgeDb.org ID mapping framework webservices

Language: JavaScript - Size: 14.7 MB - Last synced: 29 days ago - Pushed: over 1 year ago - Stars: 4 - Forks: 1

bridgedb/vocabularies

Source files for the BridgeDb ontology

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bridgedb/bridgedb.cytoscape Fork of AlexanderPico/bridgedb-app

BridgeDb App for Cytoscape 3

Language: Java - Size: 7.82 MB - Last synced: about 2 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 2

bridgedb/Validator Fork of openphacts/Validator

VoID Validator

Language: Java - Size: 558 KB - Last synced: about 2 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 1

bridgedb/IdentityMappingService Fork of openphacts/IdentityMappingService

The Identity Mapping Service to combine BridgeDb and the Validator

Language: Java - Size: 764 KB - Last synced: about 2 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

bridgedb/queryExpander Fork of openphacts/queryExpander

Language: Java - Size: 735 KB - Last synced: about 2 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

bridgedb/website

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bridgedb/EnsemblLinksetsCreator Fork of JonathanMELIUS/EnsemblLinksetsCreator

Language: Java - Size: 12.6 MB - Last synced: about 2 months ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

bridgedb/howto-examples

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bridgedb/loadTester

Generates a random lists of existing ID's and parallelizes requests.

Language: Shell - Size: 614 KB - Last synced: about 2 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

bridgedb/Goliath

Language: PHP - Size: 1020 KB - Last synced: about 2 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 1

bridgedb/bridgedb-r-deprecated Fork of BiGCAT-UM/bridgedb-r

R package for BridgeDb

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