buschlab/MTB-cbioportal

cBioPortal is a data visualization tool for cancer genomics. This repository contains all components to deploy the customized version of cBioPortal used in the PM4Onco use case of the Medical Informatics Initiative Germany.

Language: Shell - Size: 3.68 MB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 7 - Forks: 5

buschlab/MtbExporter

Language: Java - Size: 400 KB - Last synced: about 8 hours ago - Pushed: about 11 hours ago - Stars: 2 - Forks: 0

buschlab/MtbImporter

Fully automated data import tool for cBioPortal (https://github.com/cbioportal/cbioportal). Best deployed with MTB-cBioPortal (https://github.com/buschlab/MTB-cbioportal) and MIRACUM-Pipe (https://github.com/AG-Boerries/MIRACUM-Pipe-docker).

Language: Java - Size: 1.37 MB - Last synced: about 3 hours ago - Pushed: about 6 hours ago - Stars: 3 - Forks: 0

buschlab/cbioportal Fork of cBioPortal/cbioportal

cBioPortal for Cancer Genomics

Language: Java - Size: 269 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

buschlab/fhirspark

Language: Java - Size: 1.4 MB - Last synced: about 5 hours ago - Pushed: about 7 hours ago - Stars: 0 - Forks: 2

buschlab/sequenza Fork of cran/sequenza

:exclamation: This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homepage: https://sequenzatools.bitbucket.io, Mailing list: https://groups.google.com/forum/#!forum/sequenza-user-group Report bugs for this package: https://bitbucket.org/sequenzatools/sequenza/issues

Language: R - Size: 8.72 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

buschlab/MIRACUM-Pipe Fork of AG-Boerries/MIRACUM-Pipe

Whole exome sequencing pipeline including advanced variant annotation features and automated PDF reporting.

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buschlab/cbioportal-frontend Fork of cBioPortal/cbioportal-frontend

React Frontend of cBioPortal :tada:

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buschlab/cbioportal-core Fork of cBioPortal/cbioportal-core

Legacy cBioPortal Core

Language: Java - Size: 5.73 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

buschlab/bam-matcher Fork of edawson/bam-matcher

Language: Python - Size: 17.2 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

buschlab/NGS_tools Fork of kunstner/NGS_tools

Collection of tools for next generation sequencing analysis

Size: 21.5 KB - Last synced: 10 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 1

buschlab/NGS-tools-and-scripts

Language: R - Size: 12.8 MB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 2

buschlab/HowTos

Manuals and examples

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buschlab/awesome-deepbio Fork of gokceneraslan/awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

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buschlab/vep Fork of matmu/vep

Recipe for VEP + Cache

Size: 339 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 0

buschlab/MIRACUM-Pipe-singularity

MIRACUM-Pipe is a whole exome and panel sequencing pipeline for precision oncology (https://github.com/AG-Boerries/MIRACUM-Pipe). This repository is a port of the pipeline running inside a singularity container.

Language: R - Size: 5.52 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 4 - Forks: 1

buschlab/2022_canine_atopic_dermatitis_paper Fork of kunstner/2022_canine_atopic_dermatitis_paper

Size: 1.47 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

buschlab/Egyptref

Scripts and pipelines used in the generation of "An Egyptian Genome Reference"

Language: Perl - Size: 234 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 1

buschlab/TF_enrichment_analysis Fork of kunstner/TF_enrichment_analysis

COVIDomics paper: Transcription factor activity network

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buschlab/2020_population_genetics Fork of iwohlers/2020_population_genetics

Size: 4.43 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 1

buschlab/lied_egypt_genome Fork of iwohlers/lied_egypt_genome

Size: 428 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 1

buschlab/usefulStuff Fork of kunstner/usefulStuff

Collection of useful links

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