carpentries-incubator/carpentries-incubator.org

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carpentries-incubator/R-help-reprexes

A lesson on getting unstuck in R, debugging, making reproducible examples (for biologists)

Language: R - Size: 11.2 MB - Last synced at: about 2 hours ago - Pushed at: about 4 hours ago - Stars: 5 - Forks: 2

carpentries-incubator/SDC-BIDS-sMRI

Structural Neuroimaging Analysis in Python

Language: Jupyter Notebook - Size: 1.15 GB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 32 - Forks: 20

carpentries-incubator/rapid-usability-tutorial

Rapid Usability Testing: A lesson teaching rapid usability testing, intended for use as a 2-3 hour hands-on, virtual tutorial

Size: 7.85 MB - Last synced at: 5 days ago - Pushed at: 7 days ago - Stars: 2 - Forks: 0

carpentries-incubator/hpc-intro

An Introduction to High Performance Computing

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carpentries-incubator/better-research-software

Building Better Research Software

Language: Python - Size: 23.3 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 12 - Forks: 16

carpentries-incubator/statistical-experimental-design

Statistical Experimental Design

Language: R - Size: 30.8 MB - Last synced at: about 2 hours ago - Pushed at: about 4 hours ago - Stars: 2 - Forks: 2

carpentries-incubator/reproducible-publications-quarto

Introduction to Reproducible Publications with Quarto

Size: 87.1 MB - Last synced at: about 2 hours ago - Pushed at: about 4 hours ago - Stars: 17 - Forks: 26

carpentries-incubator/bioc-intro

Bioconductor data science introduction

Language: R - Size: 759 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 27 - Forks: 34

carpentries-incubator/machine-learning-novice-python

Introduction to Machine Learning with Python

Language: Python - Size: 7.05 MB - Last synced at: about 21 hours ago - Pushed at: 4 months ago - Stars: 6 - Forks: 15

carpentries-incubator/machine-learning-responsible-python

Introduction to responsible machine learning with Python

Language: Python - Size: 18.9 MB - Last synced at: about 21 hours ago - Pushed at: 4 months ago - Stars: 4 - Forks: 8

carpentries-incubator/machine-learning-neural-python

Introduction to artificial neural nets with Python

Size: 15.4 MB - Last synced at: about 21 hours ago - Pushed at: 7 days ago - Stars: 6 - Forks: 10

carpentries-incubator/intro-to-modern-fortran

Introduction to Modern Fortran

Language: R - Size: 8.6 MB - Last synced at: about 2 hours ago - Pushed at: about 5 hours ago - Stars: 20 - Forks: 6

carpentries-incubator/python-testing

Python Testing and Continuous Integration

Language: Python - Size: 1.72 MB - Last synced at: 7 days ago - Pushed at: about 3 years ago - Stars: 60 - Forks: 41

carpentries-incubator/targets-workshop

Pre-alpha {targets} workshop

Language: R - Size: 9.64 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 36 - Forks: 12

carpentries-incubator/workflows-nextflow

Workflow management with Nextflow and nf-core

Language: Nextflow - Size: 20.9 MB - Last synced at: 4 days ago - Pushed at: 8 months ago - Stars: 25 - Forks: 37

carpentries-incubator/docker-introduction

Reproducible Computational Environments using Containers

Language: Python - Size: 10.6 MB - Last synced at: 8 days ago - Pushed at: 14 days ago - Stars: 52 - Forks: 51

carpentries-incubator/julia-novice

A lesson exploring the Julia language

Language: Julia - Size: 12.4 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 17 - Forks: 24

carpentries-incubator/python-ecology-lesson Fork of datacarpentry/python-ecology-lesson

Redesigning the Data Analysis and Visualization in Python for Ecologists lesson

Language: Jupyter Notebook - Size: 20.1 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 1 - Forks: 0

carpentries-incubator/Natural-language-processing

Fundamentals of natural language processing with Python

Size: 12.3 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 3 - Forks: 0

carpentries-incubator/pando-python

Performance Profiling & Optimisation of Research Code (Python) - Short Course

Language: Python - Size: 14.1 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 3 - Forks: 8

carpentries-incubator/managing-computational-projects

Managing Open and Reproducible Computational Projects

Language: R - Size: 10.4 MB - Last synced at: 7 days ago - Pushed at: 8 months ago - Stars: 12 - Forks: 10

carpentries-incubator/SDC-BIDS-fMRI

fMRI Imaging Analysis

Language: Jupyter Notebook - Size: 38 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 45 - Forks: 39

carpentries-incubator/snakemake-novice-bioinformatics

Introduction to Snakemake for Bioinformatics

Language: Python - Size: 12.4 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 20 - Forks: 9

carpentries-incubator/bbrs-software-project

Example research software project for the Building Better Research Software lesson

Size: 942 KB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 0 - Forks: 0

carpentries-incubator/statistical-probabilistic-programming-r

Introduction to Probabilistic Programming

Language: R - Size: 27.7 MB - Last synced at: about 3 hours ago - Pushed at: about 5 hours ago - Stars: 6 - Forks: 10

carpentries-incubator/hermes_metadata_lesson

Data and Metadata in the Humanities: Structures, Schemas, and Standards

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carpentries-incubator/statistical-inference-for-biology

Statistical Inference for Biology

Language: R - Size: 13.3 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 3 - Forks: 6

carpentries-incubator/medical-image-processing

Medical Image Processing with Python

Size: 79.8 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 5 - Forks: 1

carpentries-incubator/twitter-with-twarc 📦

Introduction to Harvesting Twitter Data with Twarc

Language: Jupyter Notebook - Size: 28.8 MB - Last synced at: 7 days ago - Pushed at: 4 months ago - Stars: 4 - Forks: 4

carpentries-incubator/reproducible-ml-workflows

Reproducible Machine Learning Workflows for Scientists

Language: Python - Size: 7.69 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 5 - Forks: 2

carpentries-incubator/machine-learning-biomedical-science

Machine Learning for Biomedical Science

Language: R - Size: 51.2 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 0 - Forks: 0

carpentries-incubator/high-dimensional-stats-r

High-dimensional statistics with R

Language: R - Size: 380 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 11 - Forks: 17

carpentries-incubator/bioc-rnaseq

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor

Language: R - Size: 56.4 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 23 - Forks: 42

carpentries-incubator/python-intermediate-development

"Intermediate Research Software Development Skills (Python)" Lesson Material

Language: TeX - Size: 234 MB - Last synced at: about 17 hours ago - Pushed at: 7 days ago - Stars: 56 - Forks: 73

carpentries-incubator/reproducible-os-python

Good Practices for Reproducible Open Source Python Projects

Size: 6.22 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 1 - Forks: 0

carpentries-incubator/meetings-rse

How to Run a Meeting

Size: 7.33 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 1 - Forks: 0

carpentries-incubator/RDBMS-with-NocoDB-in-the-humanities

Relational Databases with NocoDB

Language: R - Size: 8.33 MB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 1 - Forks: 3

carpentries-incubator/singularity-introduction

An introduction to singularity

Language: Python - Size: 9.26 MB - Last synced at: 7 days ago - Pushed at: 9 months ago - Stars: 13 - Forks: 21

carpentries-incubator/web-scraping-python

Web Scraping with Python

Language: Jupyter Notebook - Size: 12.5 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 0 - Forks: 0

carpentries-incubator/bioimage-analysis-python

Bioimage Analysis with Python

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carpentries-incubator/lesson-gpu-programming

GPU Programming with Python and CUDA.

Language: R - Size: 24.4 MB - Last synced at: 7 days ago - Pushed at: 8 months ago - Stars: 25 - Forks: 13

carpentries-incubator/shell-extras

Extra Unix Shell Material

Language: Python - Size: 1.39 MB - Last synced at: 4 days ago - Pushed at: over 1 year ago - Stars: 28 - Forks: 55

carpentries-incubator/ReproducibleResearch

7 Steps towards Reproducible Research

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carpentries-incubator/r-geospatial-urban

Geospatial Data Carpentry with R for Urbanists

Language: R - Size: 265 MB - Last synced at: about 3 hours ago - Pushed at: about 5 hours ago - Stars: 2 - Forks: 9

carpentries-incubator/python-humanities-lesson

Python for Humanities

Size: 17.4 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 13 - Forks: 7

carpentries-incubator/r-tidyverse-4-datasets

R and the Tidyverse for working with data

Language: R - Size: 30 MB - Last synced at: about 2 hours ago - Pushed at: about 5 hours ago - Stars: 1 - Forks: 8

carpentries-incubator/Data-Science-for-Docs

Data Science For Practicing Clinicians

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carpentries-incubator/bioc-project

Introduction to the Bioconductor project

Language: R - Size: 17.2 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 18 - Forks: 19

carpentries-incubator/gap-lesson

Programming with GAP

Language: GAP - Size: 9.12 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 6 - Forks: 15

carpentries-incubator/git-novice-branch-pr

Version Control with Git

Size: 19.7 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 7 - Forks: 19

carpentries-incubator/deep-learning-geospatial

An introduction to deep learning for geospatial raster data (satellite images)

Size: 7.35 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 0 - Forks: 0

carpentries-incubator/python-intermediate-inflammation

A template software project for use in Intermediate Research Software Development Skills In Python course. Contact: @anenadic

Language: Python - Size: 71.3 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 6 - Forks: 293

carpentries-incubator/ml4bio-workshop

Materials for a workshop introducing machine learning to biologists

Language: Jupyter Notebook - Size: 92.5 MB - Last synced at: 7 days ago - Pushed at: 6 months ago - Stars: 23 - Forks: 9

carpentries-incubator/intro-data-viz

a Carpentries-style lesson introducing the basics of data visualization

Size: 15.3 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 9 - Forks: 2

carpentries-incubator/green-software-hpc

Green Software Use on HPC

Language: Python - Size: 17.2 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 4 - Forks: 1

carpentries-incubator/fair-explainable-ml

Fair and explainable ML workshop

Language: Jupyter Notebook - Size: 32.9 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 3 - Forks: 6

carpentries-incubator/Data-Management-Training

Data Handling and Management Training

Language: R - Size: 21.2 MB - Last synced at: 4 days ago - Pushed at: 4 months ago - Stars: 2 - Forks: 1

carpentries-incubator/genome-mining-workshop

Genome Mining Workshop Overview

Language: Python - Size: 71.4 MB - Last synced at: 4 days ago - Pushed at: 6 months ago - Stars: 2 - Forks: 1

carpentries-incubator/SDC-BIDS-IntroMRI

Introduction to MRI and BIDS

Language: Jupyter Notebook - Size: 27.6 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 26 - Forks: 19

carpentries-incubator/bioc-scrnaseq

Single-cell RNAseq materials derived from the 2023 ISMB OSCA workshop in the carpentries workbench format.

Language: R - Size: 883 MB - Last synced at: 7 days ago - Pushed at: 3 months ago - Stars: 3 - Forks: 2

carpentries-incubator/genome-mining

Genome Mining in Prokaryotes

Language: Python - Size: 26.9 MB - Last synced at: 7 days ago - Pushed at: about 1 year ago - Stars: 8 - Forks: 9

carpentries-incubator/proposals

Open an issue in this repository to share Carpentries-style lessons and lesson ideas.

Size: 73.2 KB - Last synced at: 8 days ago - Pushed at: 4 months ago - Stars: 92 - Forks: 7

carpentries-incubator/geospatial-python

Introduction to Geospatial Raster and Vector Data with Python

Size: 122 MB - Last synced at: 8 days ago - Pushed at: 14 days ago - Stars: 158 - Forks: 57

carpentries-incubator/github-skill-up-instructors

A GitHub skill-up for Carpentries instructors

Size: 7.66 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 1 - Forks: 1

carpentries-incubator/scons-novice

Automation and SCons

Language: Python - Size: 13.6 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 0 - Forks: 0

carpentries-incubator/python-novice-programming-gapminder

An introduction to Python for non-programmers using Gapminder data

Language: Python - Size: 3.1 MB - Last synced at: 9 days ago - Pushed at: 4 months ago - Stars: 2 - Forks: 0

carpentries-incubator/swc-ext-python

Workflows with Python and Git

Language: Python - Size: 14.5 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 1 - Forks: 5

carpentries-incubator/blogging-with-hugo-and-github-pages

Carpentries Incubator lesson to learn how to build blog sites with Hugo and GitHub Pages

Size: 11.3 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 3 - Forks: 1

carpentries-incubator/hpc-workflows

HPC Workflow Management with Snakemake

Language: Python - Size: 12.2 MB - Last synced at: about 2 hours ago - Pushed at: about 4 hours ago - Stars: 3 - Forks: 4

carpentries-incubator/write-readable-code

how to write a code that is readable and reusable

Language: Python - Size: 8.44 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 0 - Forks: 0

carpentries-incubator/SDC-BIDS-dMRI

Introduction to dMRI

Language: Jupyter Notebook - Size: 48.3 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 26 - Forks: 19

carpentries-incubator/intro-image-classification-cnn

new lesson on image classification with convolutional neural networks

Language: Python - Size: 31.2 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 2 - Forks: 5

carpentries-incubator/SDC-BIDS-EEG-EEGLAB

Working with EEGLAB and BIDS-EEG

Size: 19.4 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 5 - Forks: 3

carpentries-incubator/gitlab-novice

Introduction to GitLab

Size: 14.3 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 1 - Forks: 0

carpentries-incubator/data-harvesting-for-agriculture

Data Harvesting for Agriculture

Language: HTML - Size: 226 MB - Last synced at: 7 days ago - Pushed at: about 4 years ago - Stars: 4 - Forks: 2

carpentries-incubator/latex-novice-typesetting

Typesetting in LaTeX

Language: Python - Size: 701 KB - Last synced at: 7 days ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 2

carpentries-incubator/python-business

Python for Business

Language: HTML - Size: 42.2 MB - Last synced at: about 2 months ago - Pushed at: over 4 years ago - Stars: 9 - Forks: 15

carpentries-incubator/python-packaging-publishing

Packaging and Publishing with Python

Language: Python - Size: 2.22 MB - Last synced at: 7 days ago - Pushed at: almost 4 years ago - Stars: 24 - Forks: 16

carpentries-incubator/SDC-EEGLAB

Processing data with EEGLAB

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carpentries-incubator/swc_github_flow

Instructions for contributing the to free and open source materials for teaching foundational computational and data science skills to researchers maintained by The Carpentries at https://software-carpentry.org/lessons/ https://librarycarpentry.org/lessons/ and http://datacarpentry.org/lessons/

Size: 2.45 MB - Last synced at: 4 months ago - Pushed at: over 3 years ago - Stars: 12 - Forks: 11

carpentries-incubator/workflows-snakemake Fork of hpc-carpentry/hpc-python

One-day Snakemake workshop.

Language: Python - Size: 9.86 MB - Last synced at: 4 months ago - Pushed at: about 2 years ago - Stars: 9 - Forks: 12

carpentries-incubator/python-interactive-data-visualizations

Creating Interactive Data Visualizations with Python

Language: CSS - Size: 10.5 MB - Last synced at: about 3 hours ago - Pushed at: about 5 hours ago - Stars: 8 - Forks: 8

carpentries-incubator/reproducible-research-through-reusable-code-in-1-day

Lesson material for Reproducible research through reusable code workshop

Size: 10.8 MB - Last synced at: about 3 hours ago - Pushed at: about 5 hours ago - Stars: 2 - Forks: 2

carpentries-incubator/python-text-analysis

Text Analysis with Python

Language: Python - Size: 61.1 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 11 - Forks: 16

carpentries-incubator/python-intermediate-rivercatchment

A template software project for use in Intermediate Research Software Development Skills In Python course. Contact: @douglowe

Language: Python - Size: 521 KB - Last synced at: 7 days ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 26

carpentries-incubator/topological-data-analysis

Topological data analysis for Comparative Genomics

Language: Python - Size: 10.3 MB - Last synced at: 4 days ago - Pushed at: 4 months ago - Stars: 2 - Forks: 3

carpentries-incubator/ML_with_AWS_SageMaker

Learn how to scale up ML/AI pipelines using AWS SageMaker (GPUs, Cloud computing)

Language: Jupyter Notebook - Size: 11.6 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 1 - Forks: 2

carpentries-incubator/iot-novice

An introduction to the Internet of things using a motorcontroller and sensors

Size: 17.4 MB - Last synced at: 9 days ago - Pushed at: 14 days ago - Stars: 2 - Forks: 1

carpentries-incubator/hermes_stat_inf_data_vis

Statistical inference and data visualization for the humanities

Size: 13.7 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 0 - Forks: 0

carpentries-incubator/machine-learning-librarians-archivists

Introduction to AI for GLAM

Language: Python - Size: 31.9 MB - Last synced at: 4 days ago - Pushed at: 6 months ago - Stars: 18 - Forks: 15

carpentries-incubator/foundational-computer-skills

Foundational Computer Skills

Language: Python - Size: 37.1 KB - Last synced at: 7 days ago - Pushed at: almost 3 years ago - Stars: 8 - Forks: 0

carpentries-incubator/astronaut-data-analysis-not-so-fair

Helper software project with code examples for the FAIR research software course

Language: Python - Size: 265 KB - Last synced at: 4 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 2

carpentries-incubator/lesson-parallel-python

Parallel Programming in Python

Language: Dockerfile - Size: 11.8 MB - Last synced at: about 3 hours ago - Pushed at: about 5 hours ago - Stars: 11 - Forks: 15

carpentries-incubator/pangenomics

Pangenome Analysis in Prokaryotes Lesson

Language: Python - Size: 16.5 MB - Last synced at: 4 days ago - Pushed at: about 1 year ago - Stars: 13 - Forks: 7

carpentries-incubator/open-science-with-r

Carpentry-style lesson on how to use R, RStudio together with git & Github to promote Open Science practices.

Language: Python - Size: 82.6 MB - Last synced at: 7 days ago - Pushed at: almost 4 years ago - Stars: 7 - Forks: 12

carpentries-incubator/collaborative-git-and-github-lesson

Intro to Git and collaborative version control

Language: R - Size: 13.4 MB - Last synced at: about 3 hours ago - Pushed at: about 5 hours ago - Stars: 0 - Forks: 3

carpentries-incubator/good-practices-lesson

Good practices in research software development (without Git)

Size: 9.96 MB - Last synced at: about 2 hours ago - Pushed at: about 4 hours ago - Stars: 1 - Forks: 1

carpentries-incubator/github-without-command-line

A lesson to teach GitHub Without Command Line

Size: 7.91 MB - Last synced at: 6 days ago - Pushed at: 9 months ago - Stars: 5 - Forks: 1

carpentries-incubator/lc-webscraping

Introduction to web scraping

Language: Python - Size: 6.76 MB - Last synced at: 7 days ago - Pushed at: almost 2 years ago - Stars: 40 - Forks: 28