GitHub / catohaste 16 Repositories
PhD student using mathematical modelling in developmental biology
catohaste/projecteuler
Solutions to projecteuler problems.
Language: Mathematica - Size: 87.9 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
catohaste/multiple-streak-inhibition
Solving a system of ordinary differential equations to model interactions preventing the formation of multiple primitive streaks in developing chick embryos.
Language: Python - Size: 14.1 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
catohaste/hexCa
Modelling calcium ion dynamics on a fixed hexagonal grid
Language: Jupyter Notebook - Size: 13.7 MB - Last synced at: 12 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
catohaste/neighbourhood-streak
Implementation of two models which study how positional information is encoded and interpreted in the developing embryo.
Language: Python - Size: 604 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
catohaste/POMDP
Implementing a RL algorithm based upon a partially observable Markov decision process.
Language: MATLAB - Size: 420 KB - Last synced at: almost 2 years ago - Pushed at: about 5 years ago - Stars: 41 - Forks: 21
catohaste/DIAMOnD Fork of dinaghiassian/DIAMOnD
DIseAse MODule identification algorithim
Language: Python - Size: 145 KB - Last synced at: over 2 years ago - Pushed at: over 10 years ago - Stars: 0 - Forks: 0
catohaste/lesser-house-boids
Simulating flight behaviour of the lesser house fly with an agent-based approach.
Language: Python - Size: 2.43 MB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
catohaste/advent-of-code-2020
Solutions to Advent of Code 2020 puzzles
Language: Python - Size: 60.5 KB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
catohaste/PPI-network
Implementing a bioinformatics pipeline, identifying driver genes in bladder cancer using a network-based approach.
Language: Jupyter Notebook - Size: 15.6 KB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
catohaste/CFTRconductance
Implementing a simple model to estimate the conductance of CFTR using data from CFTRimg quenching experiements.
Language: MATLAB - Size: 9.77 KB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
catohaste/grid-spikes
An image analysis pipeline for analysing spikes in calcium activity.
Language: Python - Size: 8.79 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
catohaste/spiral
Playing with matplotlib.
Language: Python - Size: 3.19 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
catohaste/primitive-streak
A model of protein interactions important in primitive streak formation during chick embryonic development.
Language: Python - Size: 41 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
catohaste/shucks
Web application using Python/Flask, which helps users solve cryptic crosswords.
Language: Python - Size: 15.2 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0
catohaste/CFTRimg
An image analysis tool to estimate localisation and function of CFTR, the protein which, when mutated, causes cystic fibrosis.
Language: Matlab - Size: 93.4 MB - Last synced at: 8 months ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 1
catohaste/science-profile
Code for the website detailing my scientific career.
Language: HTML - Size: 61.9 MB - Last synced at: over 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0