cfljam/SSR_marker_design

Galaxy Wrappers and helpers for the MISA ttols

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cfljam/mapnetnz.github.io Fork of MapNetNZ/mapnetnz.github.io

MAPNet website

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cfljam/pyrat_genetics

R genetics tools for Jupyter

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cfljam/pyRat

Jupyter notebooks plus R definitions for Docker

Language: Shell - Size: 3.87 MB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 4 - Forks: 6

cfljam/ngspipeline Fork of charite/ngspipeline

Our NGS Pipeline using Nextflow

Size: 120 KB - Last synced: about 1 year ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0

cfljam/statgen_py_vm Fork of gavinln/stats_py_vm

Ubuntu 64 bit Vagrant VM for statistical genomics in Python

Language: Python - Size: 6.89 MB - Last synced: about 1 year ago - Pushed: over 9 years ago - Stars: 0 - Forks: 1

cfljam/GWASpoly Fork of jendelman/GWASpoly

GWAS software that can handle autopolyploids

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cfljam/FutureModels

running mixed models via future

Language: R - Size: 41 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

cfljam/galaxy-pcr-markers

Scripts for design of PCR-based Marker Assays from DNA sequence variant data, plus Galaxy xml files

Language: Python - Size: 167 KB - Last synced: 7 months ago - Pushed: about 7 years ago - Stars: 7 - Forks: 10

cfljam/polyRAD Fork of lvclark/polyRAD

Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝

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cfljam/VISG-course-2012

Unix shell scripts for demo workflow VISG Course October 2012

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cfljam/kiwigoldbreeding

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cfljam/Hort16AxRussell

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cfljam/test_targets_R4

testing targets R4 issues with callr

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cfljam/cfljam.github.io Fork of barryclark/jekyll-now

Blogging about working out how to do biology with code

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cfljam/Onion_BSA_RNASEQ_Workflow

Workflow for Analysis of Onion Bulked Segregant Analysis RNASEQ

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cfljam/TidyWGSWorkshop

Training and demo material for whole-genome analysis craft

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cfljam/Pop-Genomics-Workshop2019 Fork of MapNetNZ/Pop-Genomics-Workshop2019

Content for MAPNET Workshop in analysis of low-coverage population genomic data

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cfljam/pcr_marker_design Fork of PlantandFoodResearch/pcr_marker_design

Tools for PCR assay design from NGS variant data

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cfljam/DataScienceWorkshop Fork of timothymillar/DataScienceWorkshop

Language: HTML - Size: 20.7 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

cfljam/Transposome Fork of sestaton/Transposome

A toolkit for annotation of transposable element families from unassembled sequence reads

Language: Perl - Size: 33.4 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

cfljam/AlliumMap Fork of PlantandFoodResearch/AlliumMap

Curated public data about genetic markers and mapping in onion and related Allium vegetables

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cfljam/bioconda-recipes Fork of bioconda/bioconda-recipes

Conda recipes for the bioconda channel.

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cfljam/selectionTools Fork of MerrimanLab/selectionTools

Pipeline to take VCF through to Selection Analysis.

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cfljam/GFBToolbox

Vagrant VM for Marker and statistical genomics data science

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cfljam/socker

Genetic analysis document authoring with Jupyter and Docker

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cfljam/LetKEAFly

Let the Kea Fly-integrating genotype storage with KEA

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cfljam/psychic-dangerzone

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cfljam/BiotronEnvironmentalAnalysis

Contains analysis of environmental data from biotron trails

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cfljam/SWC_test

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cfljam/onion_PTS_workflow

Workflow for analysis of 454 Parallel Tagged Sequencing of long-range PCR amplicons

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cfljam/swc-christchurch Fork of timClicks/swc-christchurch

Example repo for SWC @ eResearch

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