chicagopcdc/c3dc_etl

Repository of ETL scripts for the Childhood Cancer Clinical Data Commons (C3DC)

Language: Python - Size: 1.5 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 0 - Forks: 1

chicagopcdc/pcdc-aws-client

Aws client package

Language: Python - Size: 177 KB - Last synced: 8 days ago - Pushed: 9 days ago - Stars: 0 - Forks: 0

chicagopcdc/PcdcAnalysisTools

microservice for analysis tools

Language: Python - Size: 890 KB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 0 - Forks: 0

chicagopcdc/pcdcutils

Misc python utilities for PCDC projects

Language: Python - Size: 103 KB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 0 - Forks: 0

chicagopcdc/data-portal Fork of uc-cdis/data-portal

Windmill: data portal for metadata submission and query

Language: JavaScript - Size: 33.3 MB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 0 - Forks: 1

chicagopcdc/cloud-automation Fork of uc-cdis/cloud-automation

Automation for standing up Gen3 commons on AWS, GCP, Azure, and on-prem

Language: Shell - Size: 33.8 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 0 - Forks: 0

chicagopcdc/arborist Fork of uc-cdis/arborist

Gen3 policy engine

Language: Go - Size: 1.16 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 0 - Forks: 0

chicagopcdc/fence Fork of uc-cdis/fence

AuthN/AuthZ OIDC Service

Language: Python - Size: 10 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 0 - Forks: 0

chicagopcdc/guppy Fork of uc-cdis/guppy

Server that support GraphQL queries on data from elasticsearch

Language: JavaScript - Size: 10.9 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 0 - Forks: 0

chicagopcdc/amanuensis

Service to handle project request within the GEN3 environment

Language: Python - Size: 1.38 MB - Last synced: 5 days ago - Pushed: 6 days ago - Stars: 0 - Forks: 1

chicagopcdc/sheepdog Fork of uc-cdis/sheepdog

API for herding data submissions

Language: Python - Size: 2.44 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 0 - Forks: 0

chicagopcdc/peregrine Fork of uc-cdis/peregrine

GraphQL search API service

Language: Python - Size: 623 KB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 0 - Forks: 1

chicagopcdc/pcdc-roundtable

Size: 0 Bytes - Last synced: 28 days ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

chicagopcdc/pcdc-modeling-review

Size: 0 Bytes - Last synced: 28 days ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

chicagopcdc/genomic_standards

Size: 0 Bytes - Last synced: 28 days ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

chicagopcdc/w3id.org Fork of perma-id/w3id.org

Website source code for w3id.org.

Size: 6.49 MB - Last synced: 28 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

chicagopcdc/pypfb Fork of uc-cdis/pypfb

Python library & CLI to create, view and edit PFB files

Language: Python - Size: 1.07 MB - Last synced: 28 days ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

chicagopcdc/poc-portal-register-microservice

Proof-of-concept for portal user registration microservice.

Language: Python - Size: 9.77 KB - Last synced: 28 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

chicagopcdc/pcdc-poc-tableone-microservice Fork of zhouqinbo/pcdc-poc-tableone-microservice

microservice for pcdc poc tableone

Language: Python - Size: 76.2 KB - Last synced: 28 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 2

chicagopcdc/pcdclanding.github.io

This is the landing page for pedscommons.org

Language: JavaScript - Size: 4.84 MB - Last synced: 28 days ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

chicagopcdc/ezsheets Fork of asweigart/ezsheets

A Pythonic interface to the Google Sheets API.

Language: Python - Size: 123 KB - Last synced: 28 days ago - Pushed: 10 months ago - Stars: 0 - Forks: 1

chicagopcdc/pcdc-poc-tableone-form Fork of zhouqinbo/pcdc-poc-tableone-form

react-dynamic-form

Language: JavaScript - Size: 32.2 MB - Last synced: 28 days ago - Pushed: 8 months ago - Stars: 0 - Forks: 2

chicagopcdc/linkml-data-dictionary

Define the data dictionary using LinkML for data validation and reusable artifacts. (Proof of concept)

Language: Python - Size: 2.41 MB - Last synced: 28 days ago - Pushed: 12 months ago - Stars: 1 - Forks: 0

chicagopcdc/laughing-disco

excel version testing

Language: Shell - Size: 69.3 KB - Last synced: 28 days ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

chicagopcdc/hubspotclient

Language: Python - Size: 71.3 KB - Last synced: 28 days ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

chicagopcdc/compose-services Fork of uc-cdis/compose-services

Deploy Gen3 using Docker compose

Language: Python - Size: 1.22 MB - Last synced: 28 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1

chicagopcdc/Clinical-Trial-Parser Fork of facebookresearch/Clinical-Trial-Parser

Library for converting clinical trial eligibility criteria to a machine-readable format.

Language: Go - Size: 74.8 MB - Last synced: 28 days ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

chicagopcdc/Automated-Matching-of-Patients-to-Clinical-Trials

Automated Matching of Patients to Clinical Trials: A patient-centric, Natural Language Processing Approach for Pediatric Leukemia

Language: Jupyter Notebook - Size: 42.6 MB - Last synced: 28 days ago - Pushed: about 1 year ago - Stars: 0 - Forks: 1

chicagopcdc/GSoC

Size: 30.3 KB - Last synced: 28 days ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

chicagopcdc/gen3-helm Fork of uc-cdis/gen3-helm

Helm charts for Gen3 Deployments

Language: Smarty - Size: 2.01 MB - Last synced: 14 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0

chicagopcdc/pcdc_analysis_scripts

Repository of scripts to transform PCDC raw data

Language: R - Size: 15.6 KB - Last synced: 28 days ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

chicagopcdc/v-annotator Fork of doccano/v-annotator

Language: TypeScript - Size: 495 KB - Last synced: 28 days ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

chicagopcdc/datadictionary Fork of uc-cdis/datadictionary

Gen3 Generic Data dictionary

Language: Python - Size: 1.17 MB - Last synced: 28 days ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

chicagopcdc/authutils Fork of uc-cdis/authutils

auth utilities for gen3 microservices

Language: Python - Size: 270 KB - Last synced: 28 days ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

chicagopcdc/RedcapCdmExport

Language: Python - Size: 7.81 KB - Last synced: 13 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

chicagopcdc/userPortalDataModel

data model for project request tool, save queries and analytics

Language: Python - Size: 115 KB - Last synced: 28 days ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

chicagopcdc/dictionaryutils Fork of uc-cdis/dictionaryutils

python wrapper and metaschema for datadictionary

Language: Python - Size: 965 KB - Last synced: 28 days ago - Pushed: about 1 month ago - Stars: 0 - Forks: 1

chicagopcdc/data-simulator Fork of uc-cdis/data-simulator

Language: Python - Size: 266 KB - Last synced: 26 days ago - Pushed: 26 days ago - Stars: 0 - Forks: 0

chicagopcdc/doccano Fork of doccano/doccano

Open source annotation tool for machine learning practitioners.

Language: Python - Size: 53.4 MB - Last synced: 28 days ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

chicagopcdc/pelican Fork of uc-cdis/pelican

Sower jobs for PFB export & import

Language: Python - Size: 403 KB - Last synced: 28 days ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

chicagopcdc/chicagopcdc.github.io

Repository of PCDC Documentation

Language: HTML - Size: 16.8 MB - Last synced: 12 days ago - Pushed: 12 days ago - Stars: 0 - Forks: 1

chicagopcdc/universal-data-tool Fork of UniversalDataTool/universal-data-tool

Collaborate & label any type of data, images, text, or documents, in an easy web interface or desktop app.

Size: 248 MB - Last synced: 28 days ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

chicagopcdc/tube Fork of uc-cdis/tube

ETL

Language: Python - Size: 4.83 MB - Last synced: 28 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0