Ecosyste.ms: Repos
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GitHub / ck37 61 repositories
Psychiatry faculty; biostatistics PhD. {Targeted, deep, machine} learning, NLP, IRT, computer vision, exposure mixtures, EHRs.
ck37/varimpact
Variable importance through targeted causal inference, with Alan Hubbard
Language: R - Size: 618 KB - Last synced: 13 days ago - Pushed: about 1 year ago - Stars: 57 - Forks: 13
ck37/coral-ordinal
Tensorflow Keras implementation of ordinal regression using consistent rank logits (CORAL) by Cao et al. (2019)
Language: Python - Size: 118 KB - Last synced: 15 days ago - Pushed: about 2 years ago - Stars: 76 - Forks: 22
ck37/dcurves Fork of ddsjoberg/dcurves
Decision Curve Analysis
Size: 1.17 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0
ck37/ck37r
R functions for project setup, data cleaning, machine learning, SuperLearner, parallelization, and targeted learning.
Language: R - Size: 1.13 MB - Last synced: 13 days ago - Pushed: about 1 year ago - Stars: 18 - Forks: 5
ck37/kp-dsc-2018
Kaiser Permanente Data Science Competition 2018
Language: R - Size: 644 KB - Last synced: 8 months ago - Pushed: over 5 years ago - Stars: 3 - Forks: 1
ck37/clinsent
Estimate sentiment in clinical notes via keywords or deep learning models
Language: Python - Size: 34.2 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 2 - Forks: 1
ck37/mlr3extralearners Fork of mlr-org/mlr3extralearners
Extra learners for use in mlr3.
Size: 50.3 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
ck37/featurerank
Ensemble feature ranking for SuperLearner variable selection
Language: R - Size: 85.9 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 3 - Forks: 0
ck37/superlearner-guide
SuperLearner guide: fitting models, ensembling, prediction, hyperparameters, parallelization, timing, feature selection, etc.
Language: HTML - Size: 2.28 MB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 37 - Forks: 9
ck37/htestimate
Horvitz-Thompson estimator for RCTs, with Joel Middleton
Language: R - Size: 87.9 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 6 - Forks: 1
ck37/Predictive-Modeling-in-R
Workshop (2-6 hours): cleaning, missing value imputation, EDA, ensemble learning, calibration, variable importance ranking, accumulated local effect plots. WIP.
Language: R - Size: 2.72 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 11 - Forks: 3
ck37/tlmixture
Data-adaptive creation of exposure (treatment) mixtures using targeted learning
Language: R - Size: 288 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 2 - Forks: 0
ck37/tuneRanger Fork of PhilippPro/tuneRanger
Automatic tuning of random forests
Size: 3.89 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
ck37/randomize_ado
Stata module for random assignment, including blocking, balance checking, and automated rerandomization.
Language: Stata - Size: 53.7 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 7 - Forks: 12
ck37/toxic-comments-fastai-pytorch
Analyzing Jigsaw's toxic comments Kaggle challenge using fastai + pytorch
Language: Jupyter Notebook - Size: 68.4 KB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 2 - Forks: 1
ck37/mimic-clinical-sentiment
Manuscript under review
Language: Jupyter Notebook - Size: 325 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0
ck37/Machine-Learning-in-R Fork of dlab-berkeley/Machine-Learning-in-R
Workshop (6 hours): preprocessing, cross-validation, lasso, decision trees, random forest, xgboost, superlearner ensembles
Language: R - Size: 20.8 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 1
ck37/garden-iot
Automated garden system for my office
Language: Python - Size: 141 KB - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 6 - Forks: 2
ck37/ck37
Size: 51.8 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
ck37/quicksectx Fork of jianlins/quicksectx
Size: 256 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
ck37/darwin-py Fork of v7labs/darwin-py
Library and commandline tool for managing datasets on darwin.v7labs.com
Size: 6.12 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
ck37/acic-tmle-2018
Targeted learning entry for the Atlantic Causal Inference Conference's 2018 data challenge
Language: R - Size: 1.49 MB - Last synced: 8 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0
ck37/Phase2.1DataRPackage Fork of covidclinical/Phase2.1DataRPackage
Size: 205 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
ck37/chest-pain-risk-prediction
Article under review
Language: R - Size: 63.5 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
ck37/hpc-savio-xsede
Multicore and multi-node parallel R computation via SLURM on the Savio cluster at UC Berkeley, plus XSEDE
Language: Shell - Size: 43.9 KB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 8 - Forks: 1
ck37/Phase2.1SeverityAugRPackage Fork of covidclinical/Phase2.1SeverityAugRPackage
Size: 370 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
ck37/intrees-stel
Customization of Houtao Deng's inTrees-STEL analysis
Language: R - Size: 141 KB - Last synced: about 1 year ago - Pushed: over 9 years ago - Stars: 3 - Forks: 0
ck37/Phase2.1DockerAnalysis Fork of covidclinical/Phase2.1DockerAnalysis
Size: 136 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0
ck37/embarcadero Fork of cjcarlson/embarcadero
🌲🌉 BART species distribution models 🌉 🌲
Language: R - Size: 82.2 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 1
ck37/causalquantile Fork of idiazst/causalquantile
R package for estimating quantile treatment effects
Language: R - Size: 5.86 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0
ck37/the-matrix-154
Text analytics project for Stat 154 Statistical Learning at UC Berkeley, Fall 2015.
Language: R - Size: 326 KB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 1 - Forks: 1
ck37/ppmi-challenge-2016
Parkinson's Progression Marker Initiative data science challenge, 2016
Language: R - Size: 89.8 KB - Last synced: 7 months ago - Pushed: over 7 years ago - Stars: 3 - Forks: 1
ck37/MlBayesOpt Fork of ymattu/MlBayesOpt
R package to tune parameters of machine learning(Support Vector Machine, Random Forest, and Xgboost), using bayesian optimization with gaussian process
Language: R - Size: 1.12 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 1 - Forks: 1
ck37/SuperLearner Fork of ecpolley/SuperLearner
SuperLearner R package: prediction model ensembling method
Language: R - Size: 730 KB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 1
ck37/iml Fork of christophM/iml
iml: interpretable machine learning R package
Language: R - Size: 8.41 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0
ck37/concise-r
A concise introduction to R programming and data analysis
Language: HTML - Size: 321 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 3 - Forks: 1
ck37/atlantic-causal-2017
Targeted Learning entry in the Atlantic Causal Inference Conference's 2017 competition
Language: R - Size: 1.32 MB - Last synced: 8 months ago - Pushed: almost 7 years ago - Stars: 11 - Forks: 3
ck37/sl3 Fork of tlverse/sl3
💪🤓 Modern Super Learning using Pipelines
Language: R - Size: 7.31 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0
ck37/PH295-lab Fork of wilsoncai1992/PH295-lab
PB HLTH 295, Big Data Seminar (Fall 2016, UC Berkeley)
Language: HTML - Size: 59.5 MB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 1 - Forks: 0
ck37/gmail_add_emails.py
Add a file of emails into a gmail contact list.
Language: Python - Size: 78.1 KB - Last synced: about 1 year ago - Pushed: over 15 years ago - Stars: 2 - Forks: 0
ck37/fastglm Fork of jaredhuling/fastglm
Fast glm fitting via RcppEigen
Language: C++ - Size: 18.9 MB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0
ck37/mlr3book Fork of mlr-org/mlr3book
Introduction to mlr3
Language: TeX - Size: 22.5 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0
ck37/LeakGAN Fork of CR-Gjx/LeakGAN
The codes of paper "Long Text Generation via Adversarial Training with Leaked Information" on AAAI 2018. Text generation using GAN and Hierarchical Reinforcement Learning.
Language: Python - Size: 6.97 MB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0
ck37/rJava Fork of s-u/rJava
R to Java interface
Language: Java - Size: 1 MB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0
ck37/conv-nets Fork of arokem/conv-nets
Language: Jupyter Notebook - Size: 2.02 MB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0
ck37/drtmle Fork of benkeser/drtmle
Nonparametric estimators of the average treatment effect with doubly-robust confidence intervals and hypothesis tests
Language: R - Size: 1.63 MB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0
ck37/brats17 Fork of taigw/brats17
Brain tumor segmentation for MICCAI 2017 BraTS challenge
Language: Python - Size: 43.7 MB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0
ck37/hopach
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/hopach.html Contributions: http://www.stat.berkeley.edu/~laan/, http://docpollard.org/. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=hopach.
Language: R - Size: 2.03 MB - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 0 - Forks: 0
ck37/pkgdown Fork of r-lib/pkgdown
Generate static html documentation for an R package
Language: R - Size: 1.12 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0
ck37/survtmle Fork of benkeser/survtmle
Targeted Learning for Survival Analysis
Language: R - Size: 5.21 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0
ck37/onestep.survival Fork of wilsoncai1992/onestep.survival
Treatment-specific survival curve estimation via one-step TMLE algorithm
Language: R - Size: 186 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0
ck37/ltmle Fork of joshuaschwab/ltmle
Longitudinal Targeted Maximum Likelihood Estimation package
Language: R - Size: 32.5 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0
ck37/quant_3_code Fork of adamlauretig/Quant-3-Lecture-Code
code for quant 3 lecture on hpc
Language: R - Size: 4.88 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0
ck37/mlr Fork of mlr-org/mlr
mlr: Machine Learning in R
Language: R - Size: 92.5 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0
ck37/rBayesianOptimization Fork of yanyachen/rBayesianOptimization
Bayesian Optimization of Hyperparameters
Language: R - Size: 23.4 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0
ck37/modelObj Fork of cran/modelObj
:exclamation: This is a read-only mirror of the CRAN R package repository. modelObj — A Model Object Framework for Regression Analysis
Language: R - Size: 308 KB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0
ck37/rcteval_ado
Stata module to evaluate randomized controlled trials using a systematic methodology.
Language: Stata - Size: 13.7 KB - Last synced: about 1 year ago - Pushed: almost 8 years ago - Stars: 1 - Forks: 0
ck37/specialty-probation Fork of jonno312/specialty-probation
PH 252D Final Project 2016
Language: R - Size: 84 KB - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 0 - Forks: 0
ck37/google_geocoder.py
Geocodes a text file using the Google Maps API.
Language: Python - Size: 74.2 KB - Last synced: about 1 year ago - Pushed: about 15 years ago - Stars: 3 - Forks: 0
ck37/NVRA-PDF-Generator Fork of joshsziegler/NVRA-PDF-Generator
Creates custom NVRA PDFs using Perl (PDF::Reuse) & Python.
Language: Perl - Size: 114 KB - Last synced: about 1 year ago - Pushed: over 14 years ago - Stars: 0 - Forks: 1
ck37/vip-polling-place
Determine the polling place for records listed in a text file, using Google's Voter Information Project API.
Language: Python - Size: 105 KB - Last synced: about 1 year ago - Pushed: about 11 years ago - Stars: 1 - Forks: 0
ck37/crm_report
Constituent statistics report for Blue State Digital CRM, for new media teams.
Language: PHP - Size: 109 KB - Last synced: about 1 year ago - Pushed: about 11 years ago - Stars: 0 - Forks: 0
ck37/source-generator
Codes links for use in an integrated digital campaign, for source attribution in a CRM such as BSD.
Size: 105 KB - Last synced: about 1 year ago - Pushed: about 11 years ago - Stars: 0 - Forks: 0