cpanse/alphafold Fork of google-deepmind/alphafold

Open source code for AlphaFold.

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cpanse/sage Fork of lazear/sage

Proteomics searching so fast it feels like magic

Language: Rust - Size: 3.96 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 0 - Forks: 0

cpanse/2023-EuBIC-MS-proc

Language: TeX - Size: 10.4 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 0 - Forks: 0

cpanse/koina Fork of wilhelm-lab/koina

Size: 12.2 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

cpanse/ProteoBench Fork of Proteobench/ProteoBench

ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to allow a continuous, easy, and controlled comparison of proteomics data analysis workflows.

Language: Python - Size: 89.5 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

cpanse/recmap

An algorithm to draw rectangular statistical cartograms - CRAN package

Language: C++ - Size: 20.3 MB - Last synced: 14 days ago - Pushed: 5 months ago - Stars: 20 - Forks: 1

cpanse/uvpd

Ultra HRMS in combination with UVPD fragmentation for enhanced structural identification of organic micropollutants

Language: R - Size: 36.7 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

cpanse/protViz

Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

Language: R - Size: 2.42 MB - Last synced: 2 months ago - Pushed: 5 months ago - Stars: 10 - Forks: 3

cpanse/rawDiag

Brings Orbitrap Mass Spectrometry Data to Life; Multi-platform, Fast and Colorful R package.

Language: R - Size: 131 KB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 1 - Forks: 0

cpanse/koina-Rclient

Rpkg client for koina (DLOmix) service

Language: C++ - Size: 4.13 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 2 - Forks: 0

cpanse/rawrr Fork of fgcz/rawrr

Computational analysis of raw-formatted mass spectrometry data in R. Brings your Orbitrap data to life!

Language: R - Size: 3.02 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

cpanse/timsconvert Fork of gtluu/timsconvert

Language: Python - Size: 47.2 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

cpanse/mono.issue.21320

code snippet to reproduce mono isse 21320

Language: C++ - Size: 23.4 KB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

cpanse/NestLink

Engineered Peptide Barcodes for In-Depth Analyses of Binding Protein Ensembles - replication code

Language: R - Size: 38.6 MB - Last synced: 4 months ago - Pushed: about 2 years ago - Stars: 5 - Forks: 1

cpanse/cosmiq

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/cosmiq.html Contributions: http://www.bioconductor.org/packages/devel/bioc/html/cosmiq.html. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=cosmiq.

Language: R - Size: 27.3 KB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

cpanse/specL

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/specL.html Contributions: https://github.com/fgcz/specL. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=specL or https://github.com/fgcz/specL/issues.

Language: R - Size: 997 KB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 1 - Forks: 0

cpanse/Spectra Fork of rformassspectrometry/Spectra

Low level infrastructure to handle MS spectra

Language: R - Size: 2.08 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

cpanse/RforMassSpectrometry.org Fork of rformassspectrometry/RforMassSpectrometry.org

The R for Mass Spectrometry Initiative home page

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cpanse/dlomix Fork of wilhelm-lab/dlomix

Python framework for Deep Learning in Proteomics

Size: 24.9 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

cpanse/dlomix-serving Fork of wilhelm-lab/dlomix-serving

Language: Python - Size: 329 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

cpanse/EuBIC2023 Fork of eubic/EuBIC2023

EuBIC 2023 developer's meeting

Language: Makefile - Size: 1000 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

cpanse/DiaNN Fork of vdemichev/DiaNN

DIA-NN - a universal automated software suite for DIA proteomics data analysis.

Size: 258 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

cpanse/asvz-bot Fork of fbuetler/asvz-bot

ASVZ Bot to enroll to lessons. Get a place when the registration opens or when a place gets free. Works for ETH, UZH and ZHAW students.

Size: 90.8 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

cpanse/cpanse

Size: 259 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

cpanse/bfabricShiny Fork of fgcz/bfabricShiny

Manage life sciences data using R and b-fabric - a WSDL/REST interface and a tool box; main focus on MS data

Language: R - Size: 922 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

cpanse/melt Fork of ropensci/melt

Multiple empirical likelihood tests for linear and generalized linear models.

Size: 19.5 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

cpanse/meetings Fork of coreforlife/meetings

collection of c4l proteome informatics related material

Size: 64.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

cpanse/BioDWH2 Fork of BioDWH2/BioDWH2

BioDWH2 is an easy-to-use, automated, graph-based data warehouse and mapping tool for bioinformatics and medical informatics.

Size: 4.54 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

cpanse/FragPipe Fork of Nesvilab/FragPipe

A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data

Size: 1.67 GB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

cpanse/GraphBio Fork of databio2022/GraphBio

GraphBio: a shiny web app to easily perform popular visualization analysis for omics data

Size: 3.03 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

cpanse/prolfquabenchmark Fork of wolski/prolfquabenchmark

prolfqua manuscript

Language: TeX - Size: 144 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 2

cpanse/prolfqua Fork of fgcz/prolfqua

R package for protein Label-Free Quantification

Language: R - Size: 428 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

cpanse/bioconda-recipes Fork of bioconda/bioconda-recipes

Conda recipes for the bioconda channel.

Size: 347 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

cpanse/mzXML2stl Fork of magnuspalmblad/mzXML2stl

Coverter between mzXML and STL format, e.g. for 3D printing LC-MS data

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cpanse/MsBackendTimsTof Fork of rformassspectrometry/MsBackendTimsTof

Spectra backend supporting TimsTOF data files using the opentimsr package.

Size: 37.1 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

cpanse/rawStallion Fork of fstanek/rawStallion

Requires Thermo Proteome Discoverer 2.5 installed.

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cpanse/rawrrRcpp

invoking managed code from R using ThermoFisher CommonCore library

Language: C++ - Size: 683 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0

cpanse/Skeleton Fork of dhg/Skeleton

Skeleton: A Dead Simple, Responsive Boilerplate for Mobile-Friendly Development

Size: 6.1 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

cpanse/mono Fork of mono/mono

Mono open source ECMA CLI, C# and .NET implementation.

Size: 550 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

cpanse/ThermoRawFileParser Fork of thermofisherlsms/ThermoRawFileParser

Size: 26.8 MB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

cpanse/actions Fork of r-lib/actions

GitHub Actions for the R community

Size: 1.64 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

cpanse/Rcpp Fork of RcppCore/Rcpp

Seamless R and C++ Integration

Size: 17.9 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

cpanse/SRMService Fork of protViz/SRMService

Provides reports for quantitative mass spectrometry data.

Language: R - Size: 48.3 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

cpanse/CVE-2021-3156 Fork of blasty/CVE-2021-3156

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

cpanse/hexSticker Fork of GuangchuangYu/hexSticker

:sparkles: Hexagon sticker in R

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cpanse/ping

Size: 1000 Bytes - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

cpanse/universal_spectrum_explorer Fork of kusterlab/universal_spectrum_explorer

Size: 13.1 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

cpanse/MetFrag Fork of ipb-halle/MetFrag

Size: 75.7 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

cpanse/generateSpecLibrary

Language: Python - Size: 72.9 MB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

cpanse/Hackathon Fork of wuhan2020/Hackathon

wuhan2020开源社区主办的公益Hackathon

Size: 204 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

cpanse/tartare

raw file collection recorded on Thermo Fisher Scientific mass spectrometers for extented unit testing

Language: R - Size: 63.5 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

cpanse/MSqRob Fork of statOmics/MSqRob

Robust statistical inference for quantitative LC-MS proteomics

Size: 14.5 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

cpanse/swemsa_2019 Fork of jorainer/swemsa_2019

Talk for the SWEMSA 2019 conference/workshop

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cpanse/armacmp-shiny Fork of dirkschumacher/armacmp-shiny

A small shiny app to transpile R to C++

Language: R - Size: 73.2 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

cpanse/suds-py3 Fork of cackharot/suds-py3

Mirror of http://svn.fedorahosted.org/svn/suds/trunk/ supporting Python3

Language: Python - Size: 218 KB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

cpanse/build-me-the-docs-please Fork of percursoaleatorio/build-me-the-docs-please

Language: Batchfile - Size: 4.75 MB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

cpanse/.Net-Bridge Fork of tr8dr/.Net-Bridge

.NET Bridge allowing Python and R to access .NET libraries, running either locally or remotely

Language: C# - Size: 8.69 MB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

cpanse/cosmiq-1 Fork of dajofischer/cosmiq

cosmiq - COmbining Single Masses Into Quantities

Language: R - Size: 343 KB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

cpanse/iapi Fork of thermofisherlsms/iapi

Instrument Application Programming Interface

Size: 8.67 MB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

cpanse/imageserver Fork of frankrutz/imageserver

Language: Go - Size: 0 Bytes - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

cpanse/plantGlycoMS Fork of MargaretBaker/plantGlycoMS

plantGlycoMS contains R functions and workflows for analyzing plant glycopeptide mass spectrometry data.

Language: R - Size: 137 MB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

cpanse/Specter Fork of rpeckner-broad/Specter

Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics

Language: Python - Size: 405 KB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

cpanse/GA Fork of luca-scr/GA

An R package for optimization using genetic algorithms

Language: R - Size: 13.6 MB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

cpanse/go_cart Fork of Flow-Based-Cartograms/go_cart

High-performance software to produce flow-based cartograms.

Language: C - Size: 621 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

cpanse/datasharing Fork of jtleek/datasharing

The Leek group guide to data sharing

Size: 576 KB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

cpanse/deisotoper-1 Fork of protViz/deisotoper

Implementation, development, and evaluation of algorithms for the detection and extraction of isotope pattern of a mass spectrometric measurement.

Language: Java - Size: 8.54 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

cpanse/Color2D Fork of dominikjaeckle/Color2D

JS 2D colormap to color encode scatterplots

Language: JavaScript - Size: 1.06 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

cpanse/shinyStore Fork of trestletech/shinyStore

R package that adds HTML5 Local Storage support to Shiny

Language: R - Size: 217 KB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

cpanse/Thermo-Raw-File-Reader Fork of PNNL-Comp-Mass-Spec/Thermo-Raw-File-Reader

.NET DLL wrapper for Thermo's MS File Reader, which is accessible by creating an account at https://thermo.flexnetoperations.com/control/thmo/login then logging in and choosing "Utility Software"

Language: C# - Size: 10.5 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

cpanse/ms_deisotope Fork of mobiusklein/ms_deisotope

An experimental union of brainpy and ms_peak_picker

Language: Python - Size: 1.41 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

cpanse/MSstatsQC Fork of srtaheri/MSstatsQC

Language: HTML - Size: 4.34 MB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

cpanse/fcc Fork of fgcz/fcc

An automated rule-based processing tool for life science data

Language: Python - Size: 98.6 KB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 1 - Forks: 0

cpanse/vm-mad Fork of uzh/vm-mad

Dynamically grow or shrink GridEngine clusters using cloud-based nodes.

Language: Python - Size: 2.42 MB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0