ctlab/GADMA

Genetic Algorithm for Demographic Model Analysis

Language: Python - Size: 364 MB - Last synced: 1 day ago - Pushed: 3 days ago - Stars: 43 - Forks: 13

ctlab/HiCT

Combines all HiCT-related repositories as submodules

Language: Dockerfile - Size: 69.3 KB - Last synced: 14 days ago - Pushed: 8 months ago - Stars: 2 - Forks: 0

ctlab/scNavigator

Single Cell Navigator

Language: JavaScript - Size: 274 MB - Last synced: 14 days ago - Pushed: 18 days ago - Stars: 5 - Forks: 2

ctlab/phantasus

Visual exploratory analysis of gene expression data

Language: HTML - Size: 48.7 MB - Last synced: 14 days ago - Pushed: about 1 month ago - Stars: 38 - Forks: 15

ctlab/fgsea

Fast Gene Set Enrichment Analysis

Language: R - Size: 3.22 MB - Last synced: 15 days ago - Pushed: about 1 month ago - Stars: 345 - Forks: 63

ctlab/ITMO_FS

Feature selection library in python

Language: Python - Size: 72.7 MB - Last synced: 14 days ago - Pushed: over 1 year ago - Stars: 138 - Forks: 38

ctlab/BandageNG Fork of asl/BandageNG

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Language: C++ - Size: 17.2 MB - Last synced: 14 days ago - Pushed: 21 days ago - Stars: 0 - Forks: 0

ctlab/metafast

Fast metagenome analysis toolkit

Language: Java - Size: 169 MB - Last synced: 14 days ago - Pushed: 6 months ago - Stars: 26 - Forks: 10

ctlab/gatom

Finding an Active Metabolic Module in Atom Transition Network

Language: R - Size: 3.74 MB - Last synced: 1 day ago - Pushed: about 1 month ago - Stars: 5 - Forks: 4

ctlab/GScour

Genome-wide detection of positive selection

Language: Python - Size: 1.89 MB - Last synced: 14 days ago - Pushed: 12 months ago - Stars: 9 - Forks: 0

ctlab/phantasusLite

Language: R - Size: 997 KB - Last synced: 14 days ago - Pushed: about 2 months ago - Stars: 7 - Forks: 2

ctlab/phantasus.js Fork of cmap/morpheus.js

JavaScript matrix visualization and analysis

Language: JavaScript - Size: 63.3 MB - Last synced: 14 days ago - Pushed: about 1 month ago - Stars: 2 - Forks: 4

ctlab/HiCT_WebUI

Language: TypeScript - Size: 1.17 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

ctlab/metacherchant

Language: Java - Size: 113 MB - Last synced: 14 days ago - Pushed: 5 months ago - Stars: 18 - Forks: 9

ctlab/pypipe

bioinformatics pipelines framework

Language: Python - Size: 770 KB - Last synced: 14 days ago - Pushed: almost 10 years ago - Stars: 4 - Forks: 0

ctlab/fbSAT

Tool for automatic inference of minimal finite-state models of function blocks from execution scenarios and temporal properties

Language: Kotlin - Size: 2.62 MB - Last synced: 14 days ago - Pushed: over 2 years ago - Stars: 5 - Forks: 3

ctlab/phantasus-doc

Phantasus documentation

Language: Ruby - Size: 9.77 MB - Last synced: 14 days ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

ctlab/GAMclust

GAM-clustering: Metabolic Modules Derivig From RNAseq Data

Language: HTML - Size: 20.1 MB - Last synced: 14 days ago - Pushed: 2 months ago - Stars: 2 - Forks: 0

ctlab/metafx

MetaFX – library for feature extraction from whole-genome metagenome sequencing data

Language: Shell - Size: 191 MB - Last synced: 14 days ago - Pushed: about 2 months ago - Stars: 6 - Forks: 1

ctlab/evoguess

Component EvoGuess v2.1 for finding decomposition sets and estimating hardness of SAT instances.

Language: Python - Size: 22.9 MB - Last synced: 14 days ago - Pushed: 12 months ago - Stars: 2 - Forks: 1

ctlab/true-dist-infer

Language: HTML - Size: 73.7 MB - Last synced: 14 days ago - Pushed: 9 months ago - Stars: 1 - Forks: 0

ctlab/HiCT_JVM

Language: Java - Size: 155 MB - Last synced: about 2 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

ctlab/phantasus-preimage

Opencpu + Bioconductor + devtools docker image to speed up phantasus builds

Language: Dockerfile - Size: 16.6 KB - Last synced: 14 days ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

ctlab/LinSeed

Linseed: LINear Subspace identification for gene Expresion Deconvolution

Language: R - Size: 3.96 MB - Last synced: 14 days ago - Pushed: almost 5 years ago - Stars: 27 - Forks: 8

ctlab/DFA-Inductor-py

A python tool for solving minDFA problem.

Language: Python - Size: 85 KB - Last synced: 14 days ago - Pushed: about 3 years ago - Stars: 3 - Forks: 3

ctlab/mwcsr

An R package for solving maximum-weight connected subrgaph problem and it's variants

Language: C++ - Size: 12.6 MB - Last synced: about 2 months ago - Pushed: 3 months ago - Stars: 7 - Forks: 3

ctlab/scn-pipeline

scNavigator processing pipeline for scRNA-seq data

Language: Python - Size: 11.7 MB - Last synced: 14 days ago - Pushed: over 1 year ago - Stars: 3 - Forks: 1

ctlab/evoguess-ai

Component for finding decomposition sets and estimating hardness of SAT instances.

Language: Python - Size: 1.39 MB - Last synced: 14 days ago - Pushed: 5 months ago - Stars: 3 - Forks: 0

ctlab/metafx_old 📦

Language: Jupyter Notebook - Size: 35.9 MB - Last synced: 14 days ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

ctlab/dadi_adjoint_state

The adjoint-state method for demographic inference

Language: Python - Size: 235 KB - Last synced: 14 days ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

ctlab/mcmcRanking

Tool To Solve The Active Module Problem

Language: C++ - Size: 505 KB - Last synced: 14 days ago - Pushed: over 3 years ago - Stars: 5 - Forks: 4

ctlab/virgo-solver

Solver for SGMWCS and GMWCS problems

Language: Java - Size: 1020 KB - Last synced: 14 days ago - Pushed: about 1 year ago - Stars: 3 - Forks: 0

ctlab/itmo_parsat

Probabilistic backdoor trees for SAT solving

Language: C++ - Size: 83.8 MB - Last synced: 14 days ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

ctlab/gmwcs-solver

Language: Java - Size: 502 KB - Last synced: 14 days ago - Pushed: over 3 years ago - Stars: 1 - Forks: 2

ctlab/shinyGatom

Web-service for omics-based identification of regulated metabolic modules in atom transition networks

Language: R - Size: 3.5 MB - Last synced: 14 days ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

ctlab/ImmGenOpenSource

scripts for RNAseq data processing by GAM-clustering

Language: HTML - Size: 110 MB - Last synced: 14 days ago - Pushed: over 4 years ago - Stars: 1 - Forks: 2

ctlab/ClusDec 📦

Language: R - Size: 12.9 MB - Last synced: 14 days ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0

ctlab/BioinformaticsDSL 📦

This is a DSL for manage bioinformatics pipelines

Language: Python - Size: 246 KB - Last synced: 14 days ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

ctlab/shinygam 📦

R Shiny web-app for integrated metabolic network analysis

Language: R - Size: 951 KB - Last synced: 14 days ago - Pushed: almost 2 years ago - Stars: 11 - Forks: 1

ctlab/GAM 📦

Integrated analysis of transcriptional and metabolic profiling

Language: R - Size: 1.05 MB - Last synced: 14 days ago - Pushed: almost 2 years ago - Stars: 7 - Forks: 4

ctlab/HiCT_Library

Library for interaction with Hi-C contact maps in HDF5 format

Language: Python - Size: 434 KB - Last synced: 14 days ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

ctlab/HiCT_Utils

Utilities for interaction with HiCT library and data format.

Language: Python - Size: 75.2 KB - Last synced: 14 days ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

ctlab/HiCT_Server

Language: Python - Size: 90.8 KB - Last synced: 14 days ago - Pushed: 12 months ago - Stars: 0 - Forks: 0

ctlab/dqnroute Fork of flyingleafe/dqnroute

Emulation system for routing algorithms, particularly for DQN routing

Language: Jupyter Notebook - Size: 11.2 MB - Last synced: 14 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 4

ctlab/sysbio-training

Language: HTML - Size: 96 MB - Last synced: 14 days ago - Pushed: almost 2 years ago - Stars: 6 - Forks: 2

ctlab/hammlet

Hybridization Models Maximum Likelihood Estimator

Language: Python - Size: 543 KB - Last synced: 14 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

ctlab/parallel-rearrangements

parallel rearrangements caller

Language: Python - Size: 227 MB - Last synced: 14 days ago - Pushed: about 1 year ago - Stars: 4 - Forks: 2

ctlab/Rhea-network-pipeline

Language: Python - Size: 982 KB - Last synced: 14 days ago - Pushed: about 2 years ago - Stars: 1 - Forks: 1

ctlab/KEGG-network-pipeline

Language: Python - Size: 17.6 KB - Last synced: 14 days ago - Pushed: about 2 years ago - Stars: 3 - Forks: 1

ctlab/itmo-assembler

ITMO Genome Assembler

Language: Java - Size: 16.9 MB - Last synced: 14 days ago - Pushed: about 2 years ago - Stars: 3 - Forks: 1

ctlab/gseabenchmarker-counterexample

Language: HTML - Size: 60.3 MB - Last synced: 14 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

ctlab/RECAST

RECAST (Recipient intestinE Colonisation AnalysiS Tool)

Language: Shell - Size: 63.1 MB - Last synced: 14 days ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

ctlab/SCNPrep

Language: R - Size: 6.06 MB - Last synced: 14 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1

ctlab/DFA-Inductor

Language: Java - Size: 1.28 MB - Last synced: 14 days ago - Pushed: almost 8 years ago - Stars: 6 - Forks: 1

ctlab/bebosy

Behavior examples meet Bounded Synthesis

Language: Swift - Size: 268 KB - Last synced: 14 days ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

ctlab/sgmwcs-solver

CPLEX-based solver for signal generalized maximum weight connected subgraph problem

Language: Java - Size: 635 KB - Last synced: 14 days ago - Pushed: over 3 years ago - Stars: 4 - Forks: 1

ctlab/shiny-graph

Graph module for R Shiny

Language: JavaScript - Size: 258 KB - Last synced: 14 days ago - Pushed: about 10 years ago - Stars: 3 - Forks: 0

ctlab/quant3p

A set of scripts for 3' RNA-seq quantification

Language: Python - Size: 344 KB - Last synced: 14 days ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 2

ctlab/genequery-kotlin

Basic GeneQuery logic implemented in Kotlin

Language: Kotlin - Size: 1.04 MB - Last synced: 14 days ago - Pushed: over 4 years ago - Stars: 3 - Forks: 3

ctlab/fbSAT-python

Automatic Inference and Generalization of Function Block Finite-State Models

Language: Python - Size: 454 KB - Last synced: 14 days ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

ctlab/gShell

Language: Haskell - Size: 83 KB - Last synced: 14 days ago - Pushed: over 8 years ago - Stars: 2 - Forks: 0

ctlab/fgsea-web

Language: R - Size: 18.5 MB - Last synced: 14 days ago - Pushed: over 5 years ago - Stars: 1 - Forks: 2

ctlab/beepp2bee

BEE++ to BEE translator

Language: Java - Size: 1.77 MB - Last synced: 14 days ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

ctlab/transcriptome

Transcriptome assembler

Language: Java - Size: 398 KB - Last synced: 14 days ago - Pushed: over 9 years ago - Stars: 1 - Forks: 0

ctlab/SymmetryBreakingMethods Fork of slavam2605/SymmetryBreakingMethods

Language: Prolog - Size: 16.9 MB - Last synced: 14 days ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

ctlab/fgsea-paper

Paper on fast preranked GSEA algorithm

Language: TeX - Size: 142 KB - Last synced: 14 days ago - Pushed: almost 8 years ago - Stars: 1 - Forks: 0

ctlab/genequery-web

Language: Python - Size: 3.32 MB - Last synced: 14 days ago - Pushed: about 6 years ago - Stars: 0 - Forks: 1

ctlab/genequery-java

Java modules for GeneQuery: commons, REST backend, console version, etc.

Language: Java - Size: 108 KB - Last synced: 14 days ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

ctlab/PhyloSAT

Language: Java - Size: 3.55 MB - Last synced: 14 days ago - Pushed: about 8 years ago - Stars: 0 - Forks: 3

ctlab/genequery-presentation

Beamer GeneQuery presentation

Language: TeX - Size: 1.81 MB - Last synced: 14 days ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0