dhimmel/dump-actions-context

Expose GitHub actions context based on the workflow event type

Size: 114 KB - Last synced: 4 days ago - Pushed: 5 days ago - Stars: 9 - Forks: 3

dhimmel/trackmyairtag Fork of unresolv/trackmyairtag

Scrape local macOS Find My cache, show trail on web UI. Powered by Postgres, OpenStreetMap, aiohttp.

Language: HTML - Size: 27.3 KB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

dhimmel/SIDER4

Processing SIDER 4.1: the side effect resource

Language: Jupyter Notebook - Size: 13.2 MB - Last synced: about 1 month ago - Pushed: over 8 years ago - Stars: 19 - Forks: 11

dhimmel/integrate

Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing

Language: Jupyter Notebook - Size: 565 MB - Last synced: about 1 month ago - Pushed: over 6 years ago - Stars: 29 - Forks: 16

dhimmel/photos-of-me Fork of jacoblb64/photos-of-me

Download your tagged photos from Facebook (working as of April 2023)

Size: 1.52 MB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

dhimmel/pydantic Fork of pydantic/pydantic

Data validation using Python type hints

Size: 6.07 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

dhimmel/pathways

A compilation of pathway gene sets

Language: Jupyter Notebook - Size: 2.38 MB - Last synced: about 1 month ago - Pushed: about 8 years ago - Stars: 2 - Forks: 3

dhimmel/lincs

Library of Integrated Cellular Signatures L1000

Language: Jupyter Notebook - Size: 255 MB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 25 - Forks: 5

dhimmel/indications

Processing high-throughput drug indication resources.

Language: HTML - Size: 42.2 MB - Last synced: about 1 month ago - Pushed: about 8 years ago - Stars: 15 - Forks: 6

dhimmel/drugcentral

Converting DrugCentral data to Rephetio identifiers

Language: Jupyter Notebook - Size: 558 KB - Last synced: about 1 month ago - Pushed: about 7 years ago - Stars: 4 - Forks: 0

dhimmel/ogrants Fork of weecology/ogrants

Open grants list

Language: CSS - Size: 279 KB - Last synced: about 1 month ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

dhimmel/drugbank

User-friendly extensions of the DrugBank database

Language: HTML - Size: 100 MB - Last synced: about 1 month ago - Pushed: about 5 years ago - Stars: 169 - Forks: 73

dhimmel/obonet

OBO-formatted ontologies → networkx (Python 3)

Language: Python - Size: 102 KB - Last synced: about 5 hours ago - Pushed: over 1 year ago - Stars: 134 - Forks: 27

dhimmel/hodgkins

Human disease network based on GWAS loci

Language: Jupyter Notebook - Size: 29 MB - Last synced: about 1 month ago - Pushed: over 7 years ago - Stars: 6 - Forks: 5

dhimmel/mesh

User-friendly extensions to MeSH

Language: Jupyter Notebook - Size: 80.7 MB - Last synced: about 1 month ago - Pushed: over 8 years ago - Stars: 9 - Forks: 4

dhimmel/ppi

Compiling human protein–protein interactions

Language: Jupyter Notebook - Size: 7.84 MB - Last synced: about 1 month ago - Pushed: about 8 years ago - Stars: 3 - Forks: 4

dhimmel/bindingdb

Process BindingDB

Language: HTML - Size: 14.3 MB - Last synced: about 1 month ago - Pushed: over 8 years ago - Stars: 8 - Forks: 5

dhimmel/disgenet

Processing the DisGeNET database of disease–gene association

Language: Jupyter Notebook - Size: 29.3 MB - Last synced: about 1 month ago - Pushed: about 8 years ago - Stars: 9 - Forks: 4

dhimmel/scopus

User-friendly Scopus and Journal Metrics data

Language: Jupyter Notebook - Size: 89.9 MB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 26 - Forks: 8

dhimmel/manubot Fork of manubot/manubot

the manuscript bot for automated scientific publishing

Language: Python - Size: 3.54 MB - Last synced: about 1 month ago - Pushed: 8 months ago - Stars: 1 - Forks: 1

dhimmel/osmnx Fork of gboeing/osmnx

OSMnx is a Python package to easily download, model, analyze, and visualize street networks and other geospatial features from OpenStreetMap.

Size: 7.12 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

dhimmel/bioversions Fork of biopragmatics/bioversions

🪝 What's the latest version for each database?

Size: 3.73 MB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

dhimmel/2011-ucsf-bp205a-microarray-project

A set of python utilities for analyzing microarray data.

Language: Python - Size: 35.8 MB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 1 - Forks: 0

dhimmel/bioregistry Fork of biopragmatics/bioregistry

📮 An integrative registry of biological databases, ontologies, and nomenclatures.

Language: Python - Size: 688 MB - Last synced: about 1 month ago - Pushed: 10 months ago - Stars: 0 - Forks: 1

dhimmel/openpilot Fork of commaai/openpilot

openpilot is an open source driver assistance system. openpilot performs the functions of Automated Lane Centering and Adaptive Cruise Control for 250+ supported car makes and models.

Language: Python - Size: 399 MB - Last synced: about 1 month ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

dhimmel/hackjohn

Bot to monitor for southbound permit spaces on the John Muir Trail

Language: Python - Size: 62.5 KB - Last synced: about 1 month ago - Pushed: about 3 years ago - Stars: 25 - Forks: 18

dhimmel/bitcoin-whitepaper

Reproducing the Bitcoin Whitepaper using the Manubot

Language: HTML - Size: 3.05 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 21 - Forks: 31

dhimmel/clintrials

Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov

Language: Jupyter Notebook - Size: 90.6 MB - Last synced: about 1 month ago - Pushed: almost 8 years ago - Stars: 24 - Forks: 6

dhimmel/delays

Trends in scientific publishing delays

Language: Jupyter Notebook - Size: 1.85 GB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 11 - Forks: 3

dhimmel/gwas-catalog

Extracting disease-gene associations from the GWAS Catalog

Language: Jupyter Notebook - Size: 18.7 MB - Last synced: about 1 month ago - Pushed: about 8 years ago - Stars: 2 - Forks: 6

dhimmel/kgx Fork of biolink/kgx

KGX is a Python library for exchanging Knowledge Graphs

Size: 6.78 MB - Last synced: about 1 month ago - Pushed: 8 months ago - Stars: 1 - Forks: 0

dhimmel/bgee

Extracting anatomy-specific gene expression in humans from Bgee

Language: Jupyter Notebook - Size: 2.69 MB - Last synced: about 1 month ago - Pushed: about 8 years ago - Stars: 2 - Forks: 2

dhimmel/learn

Machine learning and feature extraction for the Rephetio project

Language: Jupyter Notebook - Size: 562 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 4 - Forks: 5

dhimmel/pubmedpy

Utilities for interacting with NCBI EUtilities relating to PubMed

Language: Python - Size: 209 KB - Last synced: 18 days ago - Pushed: about 3 years ago - Stars: 9 - Forks: 2

dhimmel/biorxiv-licenses

The licensing of bioRxiv preprints

Language: Jupyter Notebook - Size: 5.4 MB - Last synced: about 1 month ago - Pushed: almost 7 years ago - Stars: 8 - Forks: 0

dhimmel/rephetio

Miscellaneous Content for Project Rephetio to repurpose drugs

Language: Jupyter Notebook - Size: 213 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 6 - Forks: 2

dhimmel/code-96

Testing repo for https://github.com/greenelab/manubot-rootstock/pull/101

Language: CSS - Size: 1.45 MB - Last synced: about 1 month ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0

dhimmel/SIDER2

Calculating compound similarities using side effects and indications extracted from drug labels

Language: TeX - Size: 157 MB - Last synced: about 1 month ago - Pushed: over 9 years ago - Stars: 3 - Forks: 6

dhimmel/serg-pycode

Python code related to networks from Daniel Himmelstein's PhD in the Sergio Baranzini Lab at UCSF

Language: Python - Size: 1.35 MB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

dhimmel/connectivity-search-backend Fork of greenelab/connectivity-search-backend

Django backend for the hetmech search engine

Language: Python - Size: 1.49 MB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

dhimmel/myelinet

Hetnet prediction of candidate remyelinating compounds

Language: Jupyter Notebook - Size: 70.3 KB - Last synced: about 1 month ago - Pushed: about 8 years ago - Stars: 2 - Forks: 1

dhimmel/efo Fork of EBISPOT/efo

Github repo for the Experimental Factor Ontology (EFO)

Language: Makefile - Size: 1.01 GB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

dhimmel/sematch Fork of gsi-upm/sematch

semantic similarity framework for knowledge graph

Size: 5.65 MB - Last synced: about 1 month ago - Pushed: 7 months ago - Stars: 1 - Forks: 0

dhimmel/irreproducible-timestamps

Replication analysis of Irving & Holden 2016

Language: Jupyter Notebook - Size: 1.11 MB - Last synced: about 1 month ago - Pushed: about 7 years ago - Stars: 2 - Forks: 2

dhimmel/rephetio-manuscript

Markdown source for the Project Rephetio Manuscript https://doi.org/10.7554/eLife.26726

Language: HTML - Size: 33.8 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 6 - Forks: 1

dhimmel/rootstock-github-token 📦

test repo for https://github.com/manubot/rootstock/pull/310

Language: HTML - Size: 569 KB - Last synced: about 1 month ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

dhimmel/disease-ontology

User-friendly extensions to the Disease Ontology

Language: Web Ontology Language - Size: 13.7 MB - Last synced: about 1 month ago - Pushed: over 7 years ago - Stars: 20 - Forks: 8

dhimmel/xswap-analysis Fork of greenelab/xswap-analysis

Analysis and experiments for https://github.com/greenelab/xswap-manuscript

Size: 109 MB - Last synced: about 1 month ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

dhimmel/translation-server Fork of zotero/translation-server

A Node.js-based server to run Zotero translators

Language: JavaScript - Size: 537 KB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

dhimmel/unichem

A python package for mapping compounds via UniChem

Language: Python - Size: 219 KB - Last synced: about 1 month ago - Pushed: almost 9 years ago - Stars: 1 - Forks: 1

dhimmel/gene-ontology

User-friendly Gene Ontology annotations

Language: Jupyter Notebook - Size: 572 MB - Last synced: about 1 month ago - Pushed: over 5 years ago - Stars: 7 - Forks: 6

dhimmel/hsdn

Analysis of the human symptoms–disease network

Language: HTML - Size: 1.38 MB - Last synced: about 1 month ago - Pushed: over 7 years ago - Stars: 18 - Forks: 13

dhimmel/gce-github-runner Fork of related-sciences/gce-github-runner

Ephemeral GCE/GCP GitHub self-hosted runner

Size: 21.5 KB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

dhimmel/het.io-dag-data

Data backend for http://het.io/disease-genes

Size: 209 MB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 5 - Forks: 2

dhimmel/uniprot

Extract uniprot mappings to other vocabularies

Size: 26.3 MB - Last synced: about 1 month ago - Pushed: about 9 years ago - Stars: 4 - Forks: 2

dhimmel/mondo Fork of monarch-initiative/mondo

Mondo Disease Ontology

Language: Jupyter Notebook - Size: 9.19 GB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

dhimmel/tpot-fss-ms Fork of trangdata/tpot-fss-ms

Manuscript for tpot-fss

Size: 16.1 MB - Last synced: about 1 month ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

dhimmel/mesothelioma

Data visualization of mesothelioma in Python

Language: Jupyter Notebook - Size: 224 KB - Last synced: about 1 month ago - Pushed: over 6 years ago - Stars: 2 - Forks: 0

dhimmel/semantic-python-overview Fork of pysemtec/semantic-python-overview

(subjective) overview of projects which are related both to python and semantic technologies (RDF, OWL, Reasoning, ...)

Size: 101 KB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

dhimmel/hetmatpy Fork of hetio/hetmatpy

Python package for matrix storage and operations on hetnets

Language: Python - Size: 181 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

dhimmel/hetmech Fork of greenelab/connectivity-search-analyses

Greene Lab/Theory In Practice collaboration on identifying mechanisms using hetnets

Language: Jupyter Notebook - Size: 51.6 MB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

dhimmel/het.io-rep-guides

Neo4j Browser Guides for Project Rephetio Predictions

Language: Jupyter Notebook - Size: 122 MB - Last synced: about 1 month ago - Pushed: over 6 years ago - Stars: 1 - Forks: 1

dhimmel/snplentiful

SNP abundance correlates with network degree

Language: Jupyter Notebook - Size: 175 MB - Last synced: about 1 month ago - Pushed: about 5 years ago - Stars: 7 - Forks: 1

dhimmel/stargeo

Generating expression signatures for disease using STARGEO

Language: Jupyter Notebook - Size: 84.6 MB - Last synced: about 1 month ago - Pushed: about 8 years ago - Stars: 2 - Forks: 1

dhimmel/entrez-gene

Processing the human Entrez Gene subset

Language: Jupyter Notebook - Size: 10.1 MB - Last synced: about 1 month ago - Pushed: over 8 years ago - Stars: 3 - Forks: 1

dhimmel/plostime

Publication delays at PLOS and 3,475 other journals

Size: 104 MB - Last synced: about 1 month ago - Pushed: almost 9 years ago - Stars: 19 - Forks: 6

dhimmel/manubot-rootstock Fork of manubot/rootstock

Manubot Rootstock fork for development

Language: HTML - Size: 703 KB - Last synced: about 1 month ago - Pushed: 5 months ago - Stars: 1 - Forks: 0

dhimmel/catalog Fork of manubot/catalog

Catalog of made with Manubot manuscripts

Language: Python - Size: 103 KB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

dhimmel/advent-of-code

Advent Of Code 2021

Language: Python - Size: 102 KB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

dhimmel/geo-heatmap Fork of luka1199/geo-heatmap

:world_map: Generate an interactive geo heatmap from your Google location data

Language: Python - Size: 4.07 MB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

dhimmel/connectivity-search-manuscript Fork of greenelab/connectivity-search-manuscript

Manuscript describing Hetnet Connectivity Search

Language: HTML - Size: 22.6 MB - Last synced: about 1 month ago - Pushed: 10 months ago - Stars: 0 - Forks: 2

dhimmel/articat Fork of related-sciences/articat

articat: data artifact catalog

Size: 241 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

dhimmel/KG4SL Fork of JieZheng-ShanghaiTech/KG4SL

Size: 30.5 MB - Last synced: about 1 month ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

dhimmel/iscb-diversity-manuscript Fork of greenelab/iscb-diversity-manuscript

Analysis of ISCB Fellows and Keynotes Reveals Disparities

Size: 47.6 MB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

dhimmel/long-trail-maps Fork of andrewharvey/osm-get-user-changeset-metadata

Script to download OSM changeset metadata for a user

Language: Jupyter Notebook - Size: 26.2 MB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

dhimmel/nature_news_manuscript Fork of greenelab/nature_news_manuscript

Size: 47.9 MB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

dhimmel/ipycytoscape Fork of cytoscape/ipycytoscape

A Cytoscape Jupyter widget

Size: 745 KB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

dhimmel/steemmonsters Fork of TrisquelWhare/smpybot

Python library for steem monsters!

Language: Python - Size: 161 KB - Last synced: about 1 month ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

dhimmel/pronto Fork of althonos/pronto

A Python frontend to Ontologies.

Size: 10 MB - Last synced: about 1 month ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

dhimmel/rootstock-pr-417-test

Testing https://github.com/manubot/rootstock/pull/417

Language: HTML - Size: 751 KB - Last synced: about 1 month ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

dhimmel/shred-bot Fork of coltonc3/shred-bot

Automated ski reservations for Ikon Pass holders during COVID

Size: 10.7 KB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

dhimmel/dude_wheres_my_lift_ticket Fork of jeffgebhardt/dude_wheres_my_lift_ticket

Automate lift ticket reservation via the Ikon portal.

Size: 5.09 MB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

dhimmel/gtex

GTEx Expression Analysis

Size: 3.67 MB - Last synced: about 1 month ago - Pushed: almost 9 years ago - Stars: 3 - Forks: 2

dhimmel/python-ecdsa Fork of tlsfuzzer/python-ecdsa

pure-python ECDSA signature/verification

Language: Python - Size: 270 KB - Last synced: about 1 month ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

dhimmel/panflute Fork of sergiocorreia/panflute

An Pythonic alternative to John MacFarlane's pandocfilters, with extra helper functions

Language: Python - Size: 1.61 MB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

dhimmel/spark Fork of apache/spark

Apache Spark - A unified analytics engine for large-scale data processing

Size: 329 MB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

dhimmel/rotki Fork of rotki/rotki

A portfolio tracking, analytics, accounting and tax reporting application that respects your privacy

Size: 36.1 MB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

dhimmel/het.io-dag-pycode

Python Code for Hetio Disease-Gene Prediction Study (PLOS Comp Bio, 2015)

Language: Python - Size: 14.6 KB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

dhimmel/human-disease-ontology Fork of obophenotype/obsolete-hdo

New repository for managing the source for the human disease ontology

Language: Web Ontology Language - Size: 50.4 MB - Last synced: about 1 month ago - Pushed: almost 9 years ago - Stars: 1 - Forks: 0

dhimmel/pmlb-manuscript Fork of EpistasisLab/pmlb-manuscript

Manuscript for PMLB v1.0

Size: 1.65 MB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

dhimmel/graphdb-docker Fork of Ontotext-AD/graphdb-docker

Docker images for GraphDB 8

Language: Dockerfile - Size: 17.6 KB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

dhimmel/het.io-dag-rcode

R Code for Hetio Disease-Gene Prediction Study (PLOS Comp Bio, 2015)

Language: R - Size: 205 KB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

dhimmel/kg

1000 Genomes

Size: 107 MB - Last synced: about 1 month ago - Pushed: almost 9 years ago - Stars: 1 - Forks: 0

dhimmel/fratjuice

Uncovering the microbes of fraternity basements

Language: Python - Size: 50.9 MB - Last synced: about 1 month ago - Pushed: over 6 years ago - Stars: 6 - Forks: 2

dhimmel/covid-publication-times

COVID-19 Literature Publication Times

Language: Jupyter Notebook - Size: 4.08 MB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

dhimmel/ghp-import Fork of c-w/ghp-import

Easily import docs to your gh-pages branch.

Language: Python - Size: 74.2 KB - Last synced: about 1 month ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

dhimmel/csl-schema Fork of citation-style-language/schema

Citation Style Language schema

Language: Python - Size: 270 KB - Last synced: about 1 month ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

dhimmel/meta-review Fork of greenelab/meta-review

Manuscript describing the Deep Review Collaborative Workflow and Manubot System

Language: HTML - Size: 44.9 MB - Last synced: about 1 month ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

dhimmel/het.io-rep-data

Data from Project Rephetio for the het.io website

Language: Jupyter Notebook - Size: 537 MB - Last synced: about 1 month ago - Pushed: over 7 years ago - Stars: 2 - Forks: 3

dhimmel/hetnetpy Fork of hetio/hetnetpy

Hetnets in Python (dhimmel's fork, the official repo has moved to hetio/hetnetpy)

Language: Python - Size: 756 KB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 4 - Forks: 1