duncanberger/SM_VARIATION

Size: 93.8 KB - Last synced: 4 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

duncanberger/nxf-cds2phylo

Nextflow pipeline for the creation of (core) multi-gene maximum-likelihood phylogenies.

Language: Nextflow - Size: 55.7 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

duncanberger/nxf-BATQual

Bacterial genome assembly, annotation and typing pipeline.

Language: Python - Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 1 - Forks: 0

duncanberger/PGL_cgMLST

Code repository for an upcoming publication focused on pneumococcal genome characterization.

Language: Python - Size: 85.9 KB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

duncanberger/schisto_livestock_hybrids

Code repository for the publication: "Genomic evidence of contemporary hybridization between Schistosoma species"

Language: Python - Size: 115 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

duncanberger/PZQ_POPGEN

Code repository for the publication: "Whole-genome sequencing of Schistosoma mansoni reveals extensive diversity with limited selection despite mass drug administration"

Size: 227 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0