dynverse/dyngen

Simulating single-cell data using gene regulatory networks 📠

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dynverse/anndata

Annotated multivariate observation data in R

Language: R - Size: 10.3 MB - Last synced at: 12 days ago - Pushed at: about 2 months ago - Stars: 48 - Forks: 4

dynverse/dynwrap

A common data format and inference environment for single-cell trajectories 📦

Language: R - Size: 15.4 MB - Last synced at: 6 days ago - Pushed at: about 2 years ago - Stars: 17 - Forks: 5

dynverse/dynparam

Language: R - Size: 554 KB - Last synced at: 16 days ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 0

dynverse/dynguidelines

Selecting the optimal trajectory inference based on a given dataset and user input 🔮

Language: R - Size: 38 MB - Last synced at: 8 months ago - Pushed at: about 5 years ago - Stars: 18 - Forks: 7

dynverse/dynutils

Common Functionality for the 'dynverse' Packages

Language: R - Size: 2.32 MB - Last synced at: 17 days ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 2

dynverse/lmds

Landmark Multi-Dimensional Scaling

Language: R - Size: 1.78 MB - Last synced at: 16 days ago - Pushed at: almost 2 years ago - Stars: 8 - Forks: 1

dynverse/dynnormaliser

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dynverse/StemID

Unofficial StemID R package

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dynverse/ti_oscope

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dynverse/Waterfall

Unofficial Waterfall R package

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dynverse/dynplot2

A grammar of graphics for single-cell trajectories 📈

Language: R - Size: 29.9 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

dynverse/spark

Language: Dockerfile - Size: 1000 Bytes - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0

dynverse/SCOUP

Unofficial SCOUP R package

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dynverse/dyneval

Metrics to compare two or more trajectories ⚖

Language: R - Size: 2.37 MB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 2

dynverse/dynbenchmark

Comparison of methods for trajectory inference on single-cell data 🥇

Language: R - Size: 20.8 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 187 - Forks: 36

dynverse/dyntoy

Toy synthetic data for testing and prototyping trajectory inference methods 🎲

Language: R - Size: 124 MB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 8 - Forks: 1

dynverse/dynmethods

A collection of 50+ trajectory inference methods within a common interface 📥📤

Language: R - Size: 18.9 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 114 - Forks: 26

dynverse/dynplot

Visualising single-cell trajectories, including comparisons between two models 📈

Language: R - Size: 36.1 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 29 - Forks: 5

dynverse/dynverse

A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍

Language: R - Size: 566 KB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 71 - Forks: 17

dynverse/ti_monocle_ddrtree

Language: R - Size: 10.1 MB - Last synced at: almost 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/Mpath

Unofficial R package for the Mpath trajectory inference method

Language: R - Size: 64.5 KB - Last synced at: almost 2 years ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 1

dynverse/ti_paga_tree

Language: Python - Size: 148 KB - Last synced at: almost 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 2

dynverse/babelwhale

Talking to Docker and Singularity containers

Language: R - Size: 500 KB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 23 - Forks: 5

dynverse/dyngen_manuscript

Language: TeX - Size: 943 MB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 5 - Forks: 0

dynverse/dyno

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕

Language: R - Size: 114 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 149 - Forks: 32

dynverse/dyncli

CLI helper package for creating TI containers

Language: R - Size: 469 KB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 2

dynverse/dyndimred

Dimred methods for TI

Language: R - Size: 484 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 7 - Forks: 2

dynverse/dynbenchmark_results

Contains the results from the dynbenchmark evaluation, see https://github.com/dynverse/dynbenchmark

Size: 586 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 2

dynverse/dynio

Language: R - Size: 5.56 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

dynverse/ti_slingshot

Language: R - Size: 10.2 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 3

dynverse/dynfeature

Extracting relevant features from single-cell trajectories 🎯

Language: R - Size: 473 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 3

dynverse/netdist Fork of filosi/nettools

Network distances

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dynverse/proxyC Fork of koheiw/proxyC

R package for large-scale similarity/distance computation

Language: R - Size: 219 KB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

dynverse/dynsite

Generator for the dynverse website at dynverse.github.io

Language: HTML - Size: 13.7 MB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

dynverse/dynverse.github.io

Hub website for the dynverse, pointing visitors towards the different repositories and app

Language: HTML - Size: 20.3 MB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

dynverse/SingleCellOpenProblems Fork of openproblems-bio/openproblems

Formalizing and benchmarking open problems in single-cell genomics

Size: 32.6 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

dynverse/ti_forks

Language: Python - Size: 10 MB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_cellrouter

Language: R - Size: 9.92 MB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_paga

Language: Python - Size: 10 MB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_monocle3

Language: R - Size: 32.2 KB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_scorpius

Language: R - Size: 10.1 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_wishbone

Language: Python - Size: 10 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_waterfall

Language: R - Size: 10 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_wanderlust

Language: Python - Size: 10 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_urd

Language: R - Size: 10.1 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_tscan

Language: R - Size: 10 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_topslam

Language: Python - Size: 10 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_stemnet

Language: R - Size: 10.1 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_slicer

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dynverse/ti_slice

Language: R - Size: 10 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_sincell

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dynverse/ti_shuffle

Language: R - Size: 10 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_scuba

Language: Python - Size: 10.1 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_scoup

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dynverse/ti_scimitar

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dynverse/ti_recat

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dynverse/ti_random

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dynverse/ti_raceid_stemid

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dynverse/ti_pseudogp

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dynverse/ti_projected_tscan

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dynverse/ti_projected_slingshot

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dynverse/ti_projected_paga

Language: Python - Size: 10 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_projected_monocle

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dynverse/ti_projected_dpt

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dynverse/ti_phenopath

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dynverse/ti_periodpc

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dynverse/ti_pcreode

Language: Python - Size: 10.3 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_ouijaflow

Language: Python - Size: 10 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_ouija

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dynverse/ti_mst

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dynverse/ti_mpath

Language: R - Size: 10 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_monocle_ica

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dynverse/ti_mfa

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dynverse/ti_merlot

Language: R - Size: 10.7 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_matcher

Language: Python - Size: 10 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_identity

Language: R - Size: 10 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_grandprix

Language: Python - Size: 10 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_gpfates

Language: Python - Size: 10 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_gng

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dynverse/ti_fateid

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dynverse/ti_error

Language: R - Size: 9.91 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_embeddr

Language: R - Size: 9.91 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_elpilinear

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dynverse/ti_elpigraph

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dynverse/ti_elpicycle

Language: R - Size: 10 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_dpt

Language: R - Size: 9.91 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_comp1

Language: R - Size: 9.91 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_celltree_vem

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dynverse/ti_celltree_maptpx

Language: R - Size: 9.91 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_celltree_gibbs

Language: R - Size: 9.91 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/ti_celltrails

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dynverse/ti_calista

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dynverse/ti_angle

Language: R - Size: 9.92 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

dynverse/dynwrap_containers

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dynverse/travis_scripts

Helper scripts for testing containers on Travis

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dynverse/scvelo

Language: R - Size: 44.9 KB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

dynverse/dynclipy

Tiny wrapper for python around dynwrap/dyncli for python

Language: Python - Size: 19.5 KB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

dynverse/scaterlegacy

Legacy version of scater

Language: R - Size: 4.69 MB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

dynverse/competition

Topcoder single-cell trajectory inference competition

Language: R - Size: 9.25 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 1