etal/cnvkit

Copy number variant detection from targeted DNA sequencing

Language: Python - Size: 108 MB - Last synced: 24 days ago - Pushed: about 1 month ago - Stars: 472 - Forks: 159

etal/bodymap

Draw anatomical maps.

Language: Python - Size: 15.6 KB - Last synced: 8 months ago - Pushed: over 6 years ago - Stars: 5 - Forks: 3

etal/cnvkit-dnanexus 📦

DNAnexus app for CNVkit

Language: Python - Size: 132 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 2 - Forks: 4

etal/cnvkit-examples

Example datasets for CNVkit (http://github.com/etal/cnvkit)

Language: Python - Size: 764 MB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 14 - Forks: 4

etal/doc2wdl

Create WDL tasks from CLI help text

Language: Python - Size: 38.1 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

etal/pytest-wdl Fork of EliLillyCo/pytest-wdl

WDL plugin for pytest

Size: 2.89 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

etal/cladecompare

Language: Python - Size: 591 KB - Last synced: 6 months ago - Pushed: about 2 years ago - Stars: 1 - Forks: 3

etal/fammer

For protein superfamily sequence profile alignment and curation.

Language: Python - Size: 6.27 MB - Last synced: about 1 month ago - Pushed: over 10 years ago - Stars: 3 - Forks: 5

etal/biopython Fork of biopython/biopython

Eric's personal Biopython branch

Language: Python - Size: 45.2 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 7 - Forks: 1

etal/IGV Fork of igvteam/igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

Language: Java - Size: 345 MB - Last synced: about 1 year ago - Pushed: almost 10 years ago - Stars: 1 - Forks: 0

etal/THetA Fork of raphael-group/THetA

Tumor Heterogeneity Analysis (THetA) is an algorithm that estimates the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data.

Language: Python - Size: 25.7 MB - Last synced: about 1 year ago - Pushed: over 9 years ago - Stars: 1 - Forks: 1

etal/seaborn Fork of mwaskom/seaborn

Statistical data visualization using matplotlib

Language: Python - Size: 70.8 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 1

etal/biofrills

Biomolecular sequence analysis modules -- a supplement to Biopython

Language: Python - Size: 228 KB - Last synced: about 2 months ago - Pushed: over 10 years ago - Stars: 7 - Forks: 2

etal/genomelake Fork of kundajelab/genomelake

Simple and efficient access to genomic data for deep learning models.

Language: Python - Size: 3.94 MB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

etal/bcbio-nextgen Fork of bcbio/bcbio-nextgen

Validated, scalable, community developed variant calling and RNA-seq analysis

Size: 35.2 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

etal/dx-toolkit Fork of dnanexus/dx-toolkit

DNAnexus platform client libraries

Language: Python - Size: 19.7 MB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

etal/biopython.github.io Fork of biopython/biopython.github.io

Source of biopython.org website, migrated from MediaWiki

Language: CSS - Size: 6.7 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

etal/vcf-scripts

Language: Python - Size: 20.5 KB - Last synced: about 1 year ago - Pushed: almost 8 years ago - Stars: 0 - Forks: 1

etal/bioconda-recipes Fork of bioconda/bioconda-recipes

Conda recipes for the bioconda channel.

Language: Shell - Size: 141 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

etal/bioseq.js

Simple biomolecular sequence processing for Javascript

Language: JavaScript - Size: 99.6 KB - Last synced: about 1 year ago - Pushed: almost 12 years ago - Stars: 3 - Forks: 1

etal/lofsigrank

Identify potential tumor suppressors from the relative burden of loss-of-function mutations.

Language: Python - Size: 207 KB - Last synced: about 1 year ago - Pushed: about 9 years ago - Stars: 0 - Forks: 0

etal/bioinformatics Fork of pjotrp/bioinformatics

Tools for bioinformatics

Size: 153 KB - Last synced: about 1 year ago - Pushed: almost 10 years ago - Stars: 0 - Forks: 0

etal/talks Fork of bow/talks

Language: TeX - Size: 215 KB - Last synced: about 1 year ago - Pushed: almost 10 years ago - Stars: 0 - Forks: 0

etal/etal.github.io

Size: 105 KB - Last synced: about 1 year ago - Pushed: about 10 years ago - Stars: 0 - Forks: 0

etal/biocma

Consensus Multiple Alignment format, using Biopython classes.

Language: Python - Size: 213 KB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 1 - Forks: 4