frankligy/public_html

Planning to be a repo to expose files to web-accessible folder

Language: HTML - Size: 69.9 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 0 - Forks: 0

frankligy/Linux_HandBook_Bioinformatics

A Linux Shell Handbook for Bioinformatician

Language: Shell - Size: 871 KB - Last synced: 19 days ago - Pushed: 19 days ago - Stars: 41 - Forks: 11

frankligy/SNAF

Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation

Language: Python - Size: 86.6 MB - Last synced: 18 days ago - Pushed: about 2 months ago - Stars: 32 - Forks: 6

frankligy/scTriangulate

scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled clustering solutions

Language: Python - Size: 141 MB - Last synced: about 2 months ago - Pushed: 10 months ago - Stars: 27 - Forks: 4

frankligy/DeepImmuno

Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity

Language: Jupyter Notebook - Size: 34.9 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 45 - Forks: 20

frankligy/numbaMCL 📦

CUDA-enabled parallel Markov Chain Clustering, implemented in python numba

Language: Jupyter Notebook - Size: 1.2 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 3 - Forks: 0

frankligy/pandas_by_examples

A compendium of useful, interesting, inspirational usage of pandas functions, each example will be an ipynb file

Language: Python - Size: 74.2 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 33 - Forks: 9

frankligy/BayesTS

Quantifying Tumor Specificity using Bayesian probabilistic modeling for drug target discovery and prioritization

Language: Python - Size: 7.58 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 4 - Forks: 0

frankligy/exercise_codes

programming exercise codes

Language: Python - Size: 7.89 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 3 - Forks: 0

frankligy/python_visualization_tutorial

A comprehensive guide of how to make publication-ready figures in python

Language: Python - Size: 2.8 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 41 - Forks: 13

frankligy/Database_management_system

C Implementation of a simple Database management system (DBMS), including storage manager and buffer manager.

Language: C - Size: 32.2 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

frankligy/Meta-analysis-TCGA 📦

A systematic meta-analysis of differentially expressed genes in melanoma and glioblastoma

Language: Python - Size: 13.6 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 2 - Forks: 0

frankligy/Secondary_Structure_Predictor 📦

A KNN model to predict protein secondary structure using its primary sequence

Language: Python - Size: 549 KB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 2 - Forks: 0

frankligy/AltNeo-BT 📦

Automated toolkit for prioritizing Neoantigens for humoral immunity (AltNeo-Bcell) and cellular immunity (AltNeo-Tcell) from bulk-RNA seq

Language: Python - Size: 9.69 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

frankligy/NeoAntigenWorkflow 📦

NeoAntigenWorkflow

Language: PostScript - Size: 94.7 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

frankligy/altanalyze3 Fork of SalomonisLab/altanalyze3

Language: Python - Size: 1.07 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

frankligy/ScPyT

Scientific Computing in Python, a practical and ultimate tutorials

Language: Jupyter Notebook - Size: 769 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 6 - Forks: 3

frankligy/BMIN7099

BMIN7099/CS7099: Introduction to bioinformatics, University of Cincinnati, Spring semester 2022

Language: Jupyter Notebook - Size: 17.8 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

frankligy/kidney_project

Language: Python - Size: 672 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

frankligy/UCSC_Custom_Track_Builder

Ease the workload for building UCSC custom track

Language: Python - Size: 3.91 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

frankligy/weblogo_peptide

Peptide weblogo generation using pure Python

Language: Python - Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

frankligy/test_git

I want to use this repo to understand some operations of git

Language: Python - Size: 9.77 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

frankligy/LabProtocols Fork of SalomonisLab/LabProtocols

Size: 78.1 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

frankligy/DeepImmuno-web

The web tool for the core functionality of DeepImmuno

Language: Python - Size: 2.51 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0