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GitHub / ghislainv 72 repositories

Researcher in ecology and applied statistics at Cirad

ghislainv/geefcc

📦🐍 geefcc Python package to get forest cover change data from Google Earth Engine

Language: Python - Size: 6.38 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 0 - Forks: 0

ghislainv/forestatrisk

📦🐍 Python package to model and forecast the risk of deforestation

Language: Python - Size: 87.9 MB - Last synced: 5 days ago - Pushed: 9 days ago - Stars: 115 - Forks: 27

ghislainv/test-xee

Test for using xee

Language: Python - Size: 13.6 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 0 - Forks: 0

ghislainv/riskmapjnr

📦🐍 Mapping deforestation risk following JNR methodology

Language: Python - Size: 109 MB - Last synced: 15 days ago - Pushed: about 2 months ago - Stars: 21 - Forks: 7

ghislainv/ghislainv.github.io

Ghislain Vieilledent's website on ecology and applied statistics

Language: R - Size: 459 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 3 - Forks: 1

ghislainv/oral-presentations

:tv: Oral presentations

Language: TeX - Size: 346 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0

ghislainv/forestatrisk-qgis-plugin

:package: :snake: :earth_africa: QGis plugin for the forestatrisk Python package

Language: Python - Size: 17.9 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

ghislainv/forest-plot-grid

Make a forest plot grid from point coordinates and azimut

Language: R - Size: 97.7 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

ghislainv/plant-available-water-deficit-french-guiana

Computing plant available water deficit in French Guiana

Size: 0 Bytes - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

ghislainv/soil-texture-map-french-guiana

Soil texture map in French Guiana

Size: 7.09 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

ghislainv/uIV

:snake: :pencil: Unstructured intraspecific variability (uIV) and community dynamics

Language: Python - Size: 338 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

ghislainv/forestatrisk-tropics

:earth_africa: :pencil: Modelling and forecasting deforestation in the tropics

Language: R - Size: 123 MB - Last synced: about 1 month ago - Pushed: 6 months ago - Stars: 29 - Forks: 2

ghislainv/gecevar

:package: :earth_americas: :mountain: :sunny: :cloud: :seedling: Get climatic and other environmental variables

Language: R - Size: 2.99 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 6 - Forks: 0

ghislainv/deforestation-maps-Mada

:pencil: Sixty years of deforestation and forest fragmentation in Madagascar

Language: TeX - Size: 55.3 MB - Last synced: 4 months ago - Pushed: over 3 years ago - Stars: 11 - Forks: 1

ghislainv/hSDM

:package: R package for hierarchical Bayesian species distribution models

Language: C - Size: 84.9 MB - Last synced: 4 months ago - Pushed: 9 months ago - Stars: 9 - Forks: 0

ghislainv/lidar_vs_globalcanopyheight

Comparing global canopy height (Lang et al. 2023) and LiDAR data

Language: R - Size: 6.46 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

ghislainv/baobabs_mada

:deciduous_tree: :earth_africa: :notebook: Code and data for Tagliari et al. 2021, Not all species will migrate poleward as the climate warms: the case of the seven baobab species in Madagascar. Global Change Biology.

Language: R - Size: 62 MB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 3 - Forks: 1

ghislainv/menabe

Deforestation in central Menabe, western Madagascar

Language: TeX - Size: 215 MB - Last synced: 4 months ago - Pushed: over 4 years ago - Stars: 3 - Forks: 0

ghislainv/wood-density-Cirad

The Cirad wood density database

Language: TeX - Size: 2.37 MB - Last synced: 4 months ago - Pushed: over 5 years ago - Stars: 2 - Forks: 0

ghislainv/JSDM-PyMC

Fitting joint species distribution models with PyMC

Language: CSS - Size: 10 MB - Last synced: 4 months ago - Pushed: 9 months ago - Stars: 2 - Forks: 0

ghislainv/JSDM_French_Guiana Fork of JeanneClement/JSDM_French_Guiana

Fitting JSDM in French Guiana

Language: HTML - Size: 19.1 MB - Last synced: 4 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

ghislainv/individual-covariance-and-coexistence

Individual covariance and species coexistence

Language: R - Size: 149 KB - Last synced: 2 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

ghislainv/pywdpa

:package: :snake: pywda Python package for simple access to world's protected areas

Language: Python - Size: 2.95 MB - Last synced: about 1 month ago - Pushed: about 3 years ago - Stars: 6 - Forks: 1

ghislainv/articles-jeanne Fork of JeanneClement/Articles

Size: 93.9 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

ghislainv/reports-jeanne Fork of JeanneClement/Report

Report joint species models

Size: 177 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

ghislainv/presentations-jeanne Fork of JeanneClement/presentations

Size: 52 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

ghislainv/intraco

Reports and presentations for the INTRACO project

Language: TeX - Size: 31.3 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

ghislainv/getCordex Fork of sylvainschmitt/getCordex

Get projection data from CORDEX

Size: 210 KB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

ghislainv/cv

Ghislain Vieilledent's curriculum vitae

Language: TeX - Size: 4.27 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 3 - Forks: 0

ghislainv/jSDM

:package: R package for joint species distribution models

Language: C++ - Size: 673 MB - Last synced: 30 days ago - Pushed: 9 months ago - Stars: 10 - Forks: 7

ghislainv/JSDM-NC

Community maps in New Caledonia using Joint Species Distribution Models

Language: HTML - Size: 9.15 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

ghislainv/dotemacs

Emacs configuration file

Language: Emacs Lisp - Size: 91.8 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

ghislainv/forestatrisk-newcaledonia

Modelling and forecasting deforestation in New-Caledonia

Language: Jupyter Notebook - Size: 1.29 MB - Last synced: 4 months ago - Pushed: almost 3 years ago - Stars: 2 - Forks: 0

ghislainv/riskmapjnr-sepal-module Fork of 12rambau/riskmapjnr

Use the riskmapjnr methodology in SEPAL to produce deforestation risk map

Size: 29.3 KB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

ghislainv/BAP Fork of aloctavodia/BAP

Bayesian Analysis with Python (Second Edition)

Size: 123 MB - Last synced: 4 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

ghislainv/ghislainv

Size: 17.6 KB - Last synced: 4 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

ghislainv/coexIV Fork of camillegirardtercieux/coexIV

:tree: Reproductible analyses supporting the idea that intraspecific variability is mainly due to environmental heterogeneity and does not blur species niche differences nor slow down competitive exclusion.

Size: 140 MB - Last synced: 4 months ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

ghislainv/box-cyclone-fire

Box for tropical cyclone-fire interaction in Madagascar

Language: R - Size: 45.9 MB - Last synced: 4 months ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0

ghislainv/araucaria_sdm Fork of masemuta/araucaria_sdm

R script to reproduce results of article "Relict populations of Araucaria angustifolia will be fragmented and poorly protected under climate change in southern Brazil"

Size: 23.5 MB - Last synced: 4 months ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0

ghislainv/hSDM_Tutorial Fork of adammwilson/hSDM_Tutorial

Language: R - Size: 22.2 MB - Last synced: 4 months ago - Pushed: about 9 years ago - Stars: 1 - Forks: 0

ghislainv/abmispecies Fork of psolymos/abmispecies

ABMI Species Website: source code development

Language: HTML - Size: 891 KB - Last synced: 4 months ago - Pushed: almost 9 years ago - Stars: 1 - Forks: 0

ghislainv/example-models Fork of stan-dev/example-models

Language: R - Size: 54.5 MB - Last synced: 4 months ago - Pushed: almost 9 years ago - Stars: 1 - Forks: 0

ghislainv/LearningBayes Fork of florianhartig/LearningBayes

Teaching material for Bayesian Statistics

Language: R - Size: 8.47 MB - Last synced: 4 months ago - Pushed: over 8 years ago - Stars: 1 - Forks: 0

ghislainv/madaclim

Free climate and environmental data for Madagascar

Language: R - Size: 187 MB - Last synced: 4 months ago - Pushed: over 7 years ago - Stars: 1 - Forks: 1

ghislainv/osgeopy-code Fork of cgarrard/osgeopy-code

Code for the book Open source geoprocessing with Python

Language: Python - Size: 169 KB - Last synced: 4 months ago - Pushed: about 8 years ago - Stars: 1 - Forks: 0

ghislainv/workshopReCaREDD

Scenarios of deforestation for tropical countries

Language: Jupyter Notebook - Size: 8.26 MB - Last synced: 4 months ago - Pushed: almost 7 years ago - Stars: 7 - Forks: 0

ghislainv/accuracy_NBR

Estimate accuracy of delta NBR for forest degradation

Language: R - Size: 103 KB - Last synced: 4 months ago - Pushed: almost 7 years ago - Stars: 2 - Forks: 0

ghislainv/Blog Fork of petrkeil/Blog

This repository contains codes for all of my blog posts since March 11 2015.

Size: 52.1 MB - Last synced: 4 months ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0

ghislainv/docker-debian-jupyter

Docker with debian 8 and Jupyter notebook

Language: Shell - Size: 2.21 MB - Last synced: 4 months ago - Pushed: over 6 years ago - Stars: 2 - Forks: 0

ghislainv/roads-osm

Extract African roads from OpenStreet Map

Language: Python - Size: 27.3 KB - Last synced: 4 months ago - Pushed: over 6 years ago - Stars: 3 - Forks: 0

ghislainv/docker-deforestprob

Docker to run the Python deforestprob module

Language: Shell - Size: 2.22 MB - Last synced: 4 months ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0

ghislainv/clean-overlay-vectors

R/GRASS scripts to clean and overlay vector data

Language: R - Size: 171 KB - Last synced: 4 months ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0

ghislainv/lifezones

Global bioclimatic scheme for the classification of land areas

Size: 3.34 MB - Last synced: 4 months ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0

ghislainv/geoprocessing-python

Various Python scripts for geoprocessing

Language: HTML - Size: 2.73 MB - Last synced: 4 months ago - Pushed: about 6 years ago - Stars: 1 - Forks: 0

ghislainv/docker_postgres838_postgis135 Fork of nevrome/docker_postgres838_postgis135

Docker image for PostgreSQL 8.3.8 with PostGIS 1.3.5

Size: 4.88 KB - Last synced: 4 months ago - Pushed: almost 6 years ago - Stars: 1 - Forks: 0

ghislainv/greta_test

Test of the greta R package

Language: R - Size: 86.9 KB - Last synced: 4 months ago - Pushed: about 6 years ago - Stars: 1 - Forks: 0

ghislainv/MCMCpack-parallel

Parallel processes with MCMCpack

Language: R - Size: 7.27 MB - Last synced: 4 months ago - Pushed: over 5 years ago - Stars: 3 - Forks: 0

ghislainv/docker-forestatrisk

Docker file for R, RStudio, reticulate, Python 3 and forestatrisk

Language: Dockerfile - Size: 20.5 KB - Last synced: 4 months ago - Pushed: over 5 years ago - Stars: 2 - Forks: 0

ghislainv/chelsafrica

African climate

Language: R - Size: 37.5 MB - Last synced: 4 months ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

ghislainv/forestatrisk-Mada

Spatial modelling and forecasting of deforestation in Madagascar

Language: R - Size: 5.38 MB - Last synced: 4 months ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 0

ghislainv/Warton2015-TRENDS

Joint species distribution models from Warton et al. 2015 in Trends in Ecology & Evolution

Language: R - Size: 25.4 KB - Last synced: 4 months ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0

ghislainv/useR-2019-tutorials

useR 2019 tutorials

Size: 13.7 KB - Last synced: 4 months ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 0

ghislainv/forecasting-deforestation-Mada

Language: HTML - Size: 11.7 MB - Last synced: 4 months ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 0

ghislainv/debian-install

Useful files to install GNU Linux Debian

Language: Shell - Size: 25.4 KB - Last synced: 4 months ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

ghislainv/forestatrisk-tutorial

Tutorial to use the 'forestatrisk' Python package to model and forecast tropical deforestation

Language: HTML - Size: 30.2 MB - Last synced: 4 months ago - Pushed: over 4 years ago - Stars: 3 - Forks: 0

ghislainv/FRB-reports-BioSceneMada

Reports for the FRB project BioSceneMada

Language: HTML - Size: 67.8 MB - Last synced: 4 months ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

ghislainv/gdal2tiles-leaflet

Tiling big raster files to plot maps with leaflet

Language: Shell - Size: 39.1 KB - Last synced: 4 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 0

ghislainv/gorillas

:gorilla: :congo_kinshasa: Estimating Grauer's gorilla distribution and population size in eastern Democratic Republic of the Congo

Language: R - Size: 1.82 MB - Last synced: 4 months ago - Pushed: about 4 years ago - Stars: 2 - Forks: 0

ghislainv/ghislainv.fr

Personal website

Language: R - Size: 1.1 MB - Last synced: 4 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 0

ghislainv/GDAL-rasterio-tutorials Fork of neerubhai/GDAL-rasterio-tutorials

Tutorials on how to use GDAL Python API and rasterio for raster data management, transformation, analysis and visualization tasks.

Size: 3.47 MB - Last synced: 4 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

ghislainv/forest-cover-percentage

Compute forest cover percentage at low resolution from a high resolution forest cover map

Size: 14.6 KB - Last synced: 4 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

ghislainv/ecoregions-mada

Plot Madagascar ecoregions

Language: R - Size: 3.46 MB - Last synced: 4 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

ghislainv/orgcss Fork of gongzhitaao/orgcss

Simple and clean CSS for Org-exported HTML

Language: CSS - Size: 2.1 MB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

ghislainv/docker-forestatrisk-tropics

:whale: Docker for the forestatrisk-tropics project

Language: Dockerfile - Size: 28.3 KB - Last synced: 4 months ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0

ghislainv/ExS-interactions

E x S interactions in high dimension explain species coexistence

Language: R - Size: 788 KB - Last synced: 4 months ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

ghislainv/coexist

Theoretical high-dimensional model for species coexistence

Language: R - Size: 61.9 MB - Last synced: 4 months ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 1

ghislainv/jrc-lidar-height-growth

Language: R - Size: 65.4 KB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

ghislainv/Vieilledent2012-Ecological-Applications

R script and data for Vieilledent2012-Ecological-Applications

Language: PostScript - Size: 195 KB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

ghislainv/U-shape-tree-mortality-DBH

Fitting U shape tree mortality model with DBH

Language: R - Size: 236 KB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

ghislainv/speciesatlas

Language: HTML - Size: 284 MB - Last synced: 4 months ago - Pushed: over 3 years ago - Stars: 2 - Forks: 1

ghislainv/carbonmap

Bioclimatic envelope models predict a decrease in tropical forest carbon stocks with climate change in Madagascar

Language: R - Size: 244 KB - Last synced: 4 months ago - Pushed: over 5 years ago - Stars: 3 - Forks: 0

ghislainv/UseR2019 Fork of edzer/UseR2019

Language: R - Size: 5.38 MB - Last synced: 4 months ago - Pushed: almost 5 years ago - Stars: 2 - Forks: 0

ghislainv/forestatrisk-jupyter-notebook

Jupyer notebook for the `forestatrisk` Python package

Language: Jupyter Notebook - Size: 1.03 MB - Last synced: 4 months ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

ghislainv/twoe

Estimating tree species demography and simulating forest dynamics

Language: C++ - Size: 450 KB - Last synced: 4 months ago - Pushed: about 5 years ago - Stars: 2 - Forks: 0

ghislainv/gifdefor

Animated gif showing deforestation trends

Language: R - Size: 20.5 KB - Last synced: 4 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0