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GitHub / glotzerlab 33 repositories

We develop molecular simulation tools to study the self-assembly of complex materials and explore matter at the nanoscale.

glotzerlab/hoomd-blue

Molecular dynamics and Monte Carlo soft matter simulation on GPUs.

Language: C++ - Size: 69.3 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 314 - Forks: 122

glotzerlab/fresnel

Publication quality path tracing in real time.

Language: C++ - Size: 19.5 MB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 107 - Forks: 8

glotzerlab/freud

Powerful, efficient particle trajectory analysis in scientific Python.

Language: C++ - Size: 80.5 MB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 258 - Forks: 47

glotzerlab/ovito-scripts

A collection of scripts for pairing OVITO with freud and other Glotzer lab packages

Language: Python - Size: 119 KB - Last synced: about 10 hours ago - Pushed: about 11 hours ago - Stars: 10 - Forks: 4

glotzerlab/coxeter

Collection of tools to help initialize and manipulate shapes.

Language: Jupyter Notebook - Size: 25.4 MB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 21 - Forks: 5

glotzerlab/signac-flow

Workflow management for signac-managed data spaces.

Language: Python - Size: 4.81 MB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 48 - Forks: 36

glotzerlab/signac

Manage large and heterogeneous data spaces on the file system.

Language: Python - Size: 7.17 MB - Last synced: 13 days ago - Pushed: 14 days ago - Stars: 129 - Forks: 35

glotzerlab/gsd

Read and write GSD files for use with HOOMD-blue.

Language: Python - Size: 2.11 MB - Last synced: 13 days ago - Pushed: 14 days ago - Stars: 24 - Forks: 7

glotzerlab/jetstream2-admin

Language: Python - Size: 107 KB - Last synced: 13 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0

glotzerlab/signac-examples

Examples for the signac framework.

Language: Jupyter Notebook - Size: 1.42 MB - Last synced: 13 days ago - Pushed: 14 days ago - Stars: 15 - Forks: 8

glotzerlab/hoomd-examples

HOOMD-blue example scripts.

Language: Jupyter Notebook - Size: 63.7 MB - Last synced: 13 days ago - Pushed: 14 days ago - Stars: 29 - Forks: 13

glotzerlab/hoomd-validation

Longer Running Validation Tests for HOOMD-blue

Language: Python - Size: 699 KB - Last synced: 13 days ago - Pushed: 14 days ago - Stars: 3 - Forks: 0

glotzerlab/signac-dashboard

Rapidly visualize signac projects through a customizable dashboard interface.

Language: Python - Size: 2.9 MB - Last synced: 13 days ago - Pushed: 14 days ago - Stars: 16 - Forks: 6

glotzerlab/hoomd-benchmarks

A collection of benchmarks for HOOMD-blue

Language: Python - Size: 78.5 MB - Last synced: 13 days ago - Pushed: 14 days ago - Stars: 7 - Forks: 0

glotzerlab/rowan

A Python package for working with quaternions.

Language: Python - Size: 3.91 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 16 - Forks: 6

glotzerlab/fix-license-header

Language: Python - Size: 22.5 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2 - Forks: 0

glotzerlab/plato

Efficient visualization of particle data supporting several rendering engines.

Language: Python - Size: 833 KB - Last synced: 15 days ago - Pushed: over 2 years ago - Stars: 12 - Forks: 4

glotzerlab/signac-docs

Documentation for the signac framework.

Size: 2.94 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 8 - Forks: 18

glotzerlab/synced_collections

Add transparent file synchronization to standard Python collections

Language: Python - Size: 456 KB - Last synced: 13 days ago - Pushed: 14 days ago - Stars: 5 - Forks: 1

glotzerlab/dupin

Package for detecting rare events in molecular simulations.

Language: Python - Size: 2.13 MB - Last synced: 4 days ago - Pushed: about 1 month ago - Stars: 4 - Forks: 1

glotzerlab/software

Docker image for Glotzer Lab software

Language: Shell - Size: 2.29 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 11 - Forks: 6

glotzerlab/fedorov

A python package to initialize different crystal structures

Language: Python - Size: 234 KB - Last synced: 5 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

glotzerlab/kneed Fork of arvkevi/kneed

Knee point detection in Python :chart_with_upwards_trend:

Language: Python - Size: 12.2 MB - Last synced: 5 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

glotzerlab/hoomd-component-template

Template repository for HOOMD-blue C++ components.

Language: CMake - Size: 43.9 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

glotzerlab/quickhull Fork of akuukka/quickhull

C++ implementation of the 3D QuickHull algorithm

Language: C++ - Size: 132 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

glotzerlab/signac-workshop

Interactive signac tutorials.

Language: Jupyter Notebook - Size: 3.65 MB - Last synced: 5 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 0

glotzerlab/plato-gallery

Example notebooks for the plato visualization project

Language: Jupyter Notebook - Size: 38.2 MB - Last synced: 9 months ago - Pushed: over 3 years ago - Stars: 4 - Forks: 0

glotzerlab/plato-containers

Container building scripts for plato CI and demonstrations

Language: Dockerfile - Size: 63.5 KB - Last synced: 9 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

glotzerlab/pythia

A library to generate numerical descriptions of particle systems.

Language: Python - Size: 6.32 MB - Last synced: 5 days ago - Pushed: over 2 years ago - Stars: 12 - Forks: 3

glotzerlab/freud-examples

Examples for the freud library.

Language: Jupyter Notebook - Size: 270 MB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 13 - Forks: 6

glotzerlab/hoomd-workshop

Interactive workshop teaching HOOMD-blue.

Language: Jupyter Notebook - Size: 441 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0

glotzerlab/cersonsky.github.io Fork of rosecers/rosecers.github.io 📦

Size: 153 MB - Last synced: 12 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

glotzerlab/hipCUB Fork of ROCmSoftwarePlatform/hipCUB

Reusable software components for rocm developers

Language: C++ - Size: 1.22 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

glotzerlab/HIP Fork of ROCm-Developer-Tools/HIP

HIP : Convert CUDA to Portable C++ Code

Language: C++ - Size: 17.2 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

glotzerlab/flowws-unit-cell

Workflow for interactively identifying crystal unit cells.

Language: Python - Size: 14.6 KB - Last synced: 24 days ago - Pushed: about 4 years ago - Stars: 1 - Forks: 0

glotzerlab/fsph

Library to quickly compute series of complex spherical harmonics.

Language: C++ - Size: 425 KB - Last synced: 16 days ago - Pushed: about 1 year ago - Stars: 3 - Forks: 0

glotzerlab/fresnel-examples

Example notebooks for fresnel

Language: Jupyter Notebook - Size: 21.4 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 2 - Forks: 4

glotzerlab/libgetar

Library to read and write GEneric Trajectory ARchives, a binary data format designed for efficient, extensible storage of trajectory data.

Language: C - Size: 3.35 MB - Last synced: 6 days ago - Pushed: 5 months ago - Stars: 2 - Forks: 0

glotzerlab/garnett

Collection of file parsers and writers for particle trajectory formats used by the Glotzer Group.

Language: Python - Size: 28.7 MB - Last synced: 2 days ago - Pushed: almost 1 year ago - Stars: 8 - Forks: 2

glotzerlab/qhull Fork of qhull/qhull

Development for www.qhull.org

Language: C - Size: 5.41 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

glotzerlab/pre-commit-clang-format

Pre-commit hooks for clang-format

Size: 7.81 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 1

glotzerlab/random123

Tracking DE Shaw Research's random123 library

Language: C++ - Size: 890 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1

glotzerlab/cub Fork of NVIDIA/cub

CUB is a flexible library of cooperative threadblock primitives and other utilities for CUDA kernel programming.

Language: Cuda - Size: 16.1 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

glotzerlab/glotzerlab_citations

Collection of citations commonly used in papers in the Glotzer group

Language: TeX - Size: 197 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 0

glotzerlab/mistune Fork of csadorf/mistune

A fast yet powerful Python Markdown parser with renderers and plugins.

Language: Python - Size: 611 KB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

glotzerlab/freud-docker-images

Docker images used in testing freud

Size: 0 Bytes - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

glotzerlab/pybind11 Fork of pybind/pybind11

Seamless operability between C++11 and Python

Language: C++ - Size: 3.67 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

glotzerlab/peact

A library for reactive programming in Python.

Language: Python - Size: 313 KB - Last synced: 9 months ago - Pushed: over 5 years ago - Stars: 2 - Forks: 0

glotzerlab/signac-benchmarks

Benchmarks for the core signac application.

Language: Python - Size: 46.9 KB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

glotzerlab/signac-project-template

!!! OUTDATED!!!

Language: Python - Size: 44.9 KB - Last synced: 8 months ago - Pushed: almost 7 years ago - Stars: 4 - Forks: 7

glotzerlab/eigen-git-mirror Fork of eigenteam/eigen-git-mirror

Github mirror of the official Eigen's repository (https://bitbucket.org/eigen/eigen)

Language: C++ - Size: 83.9 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

glotzerlab/upp11 Fork of DronMDF/upp11

C++11 lightweight single header unit test framework

Language: C++ - Size: 70.3 KB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

glotzerlab/nano-signal-slot Fork of NoAvailableAlias/nano-signal-slot

Pure C++11 Signals and Slots

Language: C++ - Size: 452 KB - Last synced: about 1 year ago - Pushed: almost 8 years ago - Stars: 0 - Forks: 0

glotzerlab/cereal Fork of USCiLab/cereal

A C++11 library for serialization

Language: C++ - Size: 13.2 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0