igvteam/igv-webapp

IGV Web App

Language: JavaScript - Size: 8.17 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 109 - Forks: 41

igvteam/igv.js

Embeddable genomic visualization component based on the Integrative Genomics Viewer

Language: JavaScript - Size: 193 MB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 624 - Forks: 219

igvteam/spacewalk

SpaceWalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js and juicebox.js instances for rapid and intuitive visual comparison and interaction between 3D data and 1D genomic data.

Language: JavaScript - Size: 120 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 10 - Forks: 1

igvteam/cram-js Fork of GMOD/cram-js

Read CRAM v3 and v2 in node or in the browser

Language: TypeScript - Size: 38.7 MB - Last synced: 18 days ago - Pushed: 19 days ago - Stars: 0 - Forks: 0

igvteam/igv-docs-website

Markdown-based documentation website - IGV desktop application

Language: JavaScript - Size: 14.9 MB - Last synced: 26 days ago - Pushed: 27 days ago - Stars: 3 - Forks: 1

igvteam/juicebox.js

HiC contact matrix visualization

Language: JavaScript - Size: 35.5 MB - Last synced: 30 days ago - Pushed: 8 months ago - Stars: 19 - Forks: 13

igvteam/igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

Language: Java - Size: 426 MB - Last synced: 24 days ago - Pushed: about 2 months ago - Stars: 610 - Forks: 377

igvteam/igv-notebook

Module for embedding igv.js in an IPython notebook

Language: JavaScript - Size: 3.03 MB - Last synced: about 1 month ago - Pushed: 8 months ago - Stars: 56 - Forks: 12

igvteam/igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

Language: Python - Size: 102 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 324 - Forks: 47

igvteam/igv.js-react

Example project for using igv.js with React

Language: JavaScript - Size: 143 KB - Last synced: 2 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

igvteam/igv-widgets

UI widgets for igvteam applications

Language: JavaScript - Size: 1.41 MB - Last synced: 2 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 2

igvteam/htsjdk Fork of samtools/htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

Language: Java - Size: 98.2 MB - Last synced: 2 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 1

igvteam/igv-electron

Language: JavaScript - Size: 421 KB - Last synced: 2 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

igvteam/vectorgraphics2d Fork of eseifert/vectorgraphics2d

Graphics2D implementations to export various vector file formats

Language: Java - Size: 1.02 MB - Last synced: 2 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

igvteam/bgzip

Language: JavaScript - Size: 114 KB - Last synced: 2 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

igvteam/shoebox

Language: JavaScript - Size: 341 KB - Last synced: 2 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

igvteam/Juicebox Fork of aidenlab/Juicebox

Visualization and analysis software for Hi-C data -

Language: Java - Size: 255 MB - Last synced: 2 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

igvteam/sandbox

Size: 117 KB - Last synced: 2 months ago - Pushed: about 9 years ago - Stars: 0 - Forks: 0

igvteam/test-utils

Language: JavaScript - Size: 7.81 KB - Last synced: 2 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

igvteam/igv-utils

Language: JavaScript - Size: 511 KB - Last synced: 2 months ago - Pushed: 6 months ago - Stars: 5 - Forks: 4

igvteam/d4server

Prototype D4 server

Language: Python - Size: 4.88 KB - Last synced: 2 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

igvteam/igv-ipad

IGV for iPad

Language: Objective-C - Size: 3.1 MB - Last synced: 2 months ago - Pushed: over 9 years ago - Stars: 5 - Forks: 0

igvteam/igv-juicebox

Prototypes exploring potential igv.js <-> juicebox.js interactions.

Language: JavaScript - Size: 20.5 KB - Last synced: 2 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

igvteam/extractome

Creates an "extracted" genome assembly from a fasta + list of regions

Language: Python - Size: 599 KB - Last synced: 2 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

igvteam/cursor

Size: 30.4 MB - Last synced: 2 months ago - Pushed: over 7 years ago - Stars: 2 - Forks: 1

igvteam/google-utils

Language: JavaScript - Size: 18.6 KB - Last synced: 2 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

igvteam/hic-straw

Command line and web utilities for reading .hic contact matrix files

Language: JavaScript - Size: 3.32 MB - Last synced: 2 months ago - Pushed: about 1 year ago - Stars: 7 - Forks: 4

igvteam/circular-view

Wrapper class for JBrowse genomic circular view component

Language: JavaScript - Size: 64.5 KB - Last synced: 2 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

igvteam/igv.js-flask

Example project for integrating igv.js and flask

Language: Python - Size: 438 KB - Last synced: 2 months ago - Pushed: almost 3 years ago - Stars: 26 - Forks: 15

igvteam/data-modal

A data resource browser and selector based on DataTables. Used by igv applications for selecting files from ENCODE and other data resources.

Language: JavaScript - Size: 207 KB - Last synced: 2 months ago - Pushed: about 1 year ago - Stars: 2 - Forks: 2

igvteam/juicebox-web

Language: JavaScript - Size: 474 KB - Last synced: 2 months ago - Pushed: 8 months ago - Stars: 2 - Forks: 0

igvteam/swcproject

SpaceWalk CLI tool to convert legacy point-cloud and ensemble files to .sw format

Language: JavaScript - Size: 4.81 MB - Last synced: 11 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

igvteam/juicebox-notebook

Language: JavaScript - Size: 3.09 MB - Last synced: 16 days ago - Pushed: 9 months ago - Stars: 1 - Forks: 0

igvteam/circular-view-app

Language: JavaScript - Size: 2.03 MB - Last synced: 2 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 1

igvteam/igv-ui

UI components for igv.js and related projects

Language: JavaScript - Size: 1.95 MB - Last synced: 2 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 3