ihmeuw/vivarium_gates_nutrition_optimization_child

Language: Python - Size: 69.8 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 0 - Forks: 0

ihmeuw/rra-tools

Language: Python - Size: 691 KB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 0 - Forks: 0

ihmeuw/vivarium_inputs

Language: Python - Size: 19 MB - Last synced: 5 days ago - Pushed: 6 days ago - Stars: 1 - Forks: 0

ihmeuw/vivarium_research

Documentation for working on vivarium research projects.

Size: 72.4 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 5 - Forks: 7

ihmeuw/gbd_mapping

Mapping of GBD entities to their metadata

Language: Python - Size: 901 KB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 8 - Forks: 4

ihmeuw/easylink

Language: Python - Size: 1.31 MB - Last synced: 9 days ago - Pushed: 10 days ago - Stars: 1 - Forks: 0

ihmeuw/ASHER_decomp

Language: R - Size: 305 KB - Last synced: 19 days ago - Pushed: 19 days ago - Stars: 0 - Forks: 0

ihmeuw/vivarium_nih_us_cvd

Language: Python - Size: 3.62 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 0 - Forks: 0

ihmeuw/pseudopeople

pseudopeople is a Python package that generates realistic simulated data about a fictional United States population, designed for use in testing entity resolution (record linkage) methods or other data science algorithms at scale.

Language: Python - Size: 148 MB - Last synced: 23 days ago - Pushed: 24 days ago - Stars: 14 - Forks: 1

ihmeuw/cost_effectiveness_global_fund_interventions

Language: Python - Size: 51.8 KB - Last synced: 25 days ago - Pushed: 26 days ago - Stars: 0 - Forks: 0

ihmeuw/vivarium_research_ciff_sam

Notebooks and analysis from the research side of the Simulation Science team for the CIFF project

Language: Jupyter Notebook - Size: 287 MB - Last synced: 29 days ago - Pushed: about 1 month ago - Stars: 0 - Forks: 1

ihmeuw/vivarium_helpers

Tools maintained by the research side of the simulation science team

Language: Python - Size: 157 KB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 0 - Forks: 0

ihmeuw/vivarium

A python microsimulation framework

Language: Python - Size: 9.07 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 44 - Forks: 10

ihmeuw/dismod_mr

An Integrative Metaregression Framework for Descriptive Epidemiology

Language: Python - Size: 6.34 MB - Last synced: 18 days ago - Pushed: about 1 year ago - Stars: 44 - Forks: 30

ihmeuw/vivarium_cluster_tools

Tools for running Vivarium simulations on IHME's Slurm cluster

Language: Python - Size: 836 KB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 1 - Forks: 3

ihmeuw/ihme-modeling

GATHER compliant code for the GBD

Language: R - Size: 51.8 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 92 - Forks: 59

ihmeuw/layered_config_tree

A configuration structure which supports cascading layers

Language: Python - Size: 9.89 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

ihmeuw/us_dementia_caregiving

Language: R - Size: 121 KB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

ihmeuw/fp_mapping

Language: R - Size: 228 KB - Last synced: about 1 month ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

ihmeuw/ScrollyTeller

A JavaScript library to build scrollytelling visualizations from tabular data

Language: JavaScript - Size: 4.03 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 64 - Forks: 8

ihmeuw/lbd

Local Burden of Disease

Size: 4.98 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 35 - Forks: 10

ihmeuw/GEM

Language: R - Size: 146 KB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

ihmeuw/birds

Repository of analytical code for the BIRDS team.

Size: 146 KB - Last synced: about 1 month ago - Pushed: 10 months ago - Stars: 3 - Forks: 6

ihmeuw/cartodb-docker

CartoDB containerized as separate microservices with Docker

Language: JavaScript - Size: 26.4 KB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 28 - Forks: 20

ihmeuw/sickle_cell_disease_gbd_2021

Global, regional, and national prevalence and mortality burden of sickle cell disease among children and adults, 2000 - 2021: a systematic analysis from the Global Burden of Disease Study 2021.

Language: R - Size: 39.1 KB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

ihmeuw/vivarium_testing_utils

Language: Python - Size: 21.5 KB - Last synced: 25 days ago - Pushed: 25 days ago - Stars: 0 - Forks: 0

ihmeuw/lbd_2017

Language: R - Size: 269 KB - Last synced: about 1 month ago - Pushed: about 6 years ago - Stars: 4 - Forks: 5

ihmeuw/risk_distributions

Language: Python - Size: 159 KB - Last synced: 23 days ago - Pushed: 3 months ago - Stars: 0 - Forks: 3

ihmeuw/vivarium_public_health

Vivarium microsimulation tools used to model diseases and interventions.

Language: Python - Size: 2.92 MB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 18 - Forks: 6

ihmeuw/vivarium_census_prl_synth_pop

US Census Probabilistic Record Linkage synthetic population generation

Language: Python - Size: 116 MB - Last synced: 23 days ago - Pushed: about 1 month ago - Stars: 1 - Forks: 1

ihmeuw/ihme-ui

Institute for Health Metrics and Evaluation UI Toolkit

Language: JavaScript - Size: 9.87 MB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 21 - Forks: 12

ihmeuw/ihme-python-course

IHME's Python data science curriculum for new employees

Language: Jupyter Notebook - Size: 12.1 MB - Last synced: about 1 month ago - Pushed: almost 4 years ago - Stars: 28 - Forks: 23

ihmeuw/CHAIN_IHME_adultmortality_edu_sysreview

Language: R - Size: 1.83 MB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

ihmeuw/Resource_Tracking_US_DEX

This repository contains cleaned code that the Resource Tracking US Health Spending, also known as US disease expenditure (DEX), sub-team used to generate results for their publications.

Size: 112 KB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 0

ihmeuw/Resource_Tracking_Economic_Indicators

This repository contains cleaned code that the Resource Tracking Economic Indicators sub-team used to generate results for their publications.

Size: 3.91 KB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 2 - Forks: 0

ihmeuw/Resource_Tracking_DAH

This repository contains cleaned code that the Resource Tracking Development Assistance for Health (DAH) sub-team used to generate results for their publications.

Language: R - Size: 8.01 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

ihmeuw/Resource_Tracking_Domestic_Health_Accounts

This repository contains cleaned code that the Resource Tracking Domestic Health Accounts (DHA) sub-team used to generate results for their publications.

Language: R - Size: 152 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 3 - Forks: 1

ihmeuw/covid-model-seiir-pipeline

The IHME COVID-19 SEIIR Model.

Language: Python - Size: 15.3 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 23 - Forks: 10

ihmeuw/environmental_risk_factors

Size: 24.4 KB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 2 - Forks: 4

ihmeuw/USHD

Size: 678 KB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 3 - Forks: 1

ihmeuw/hssa_haq

Language: R - Size: 10.7 KB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 1 - Forks: 1

ihmeuw/che-covid

This repository contains code for the analysis described in the Lancet Global Health manuscript, "Catastrophic health expenditure during the COVID-19 pandemic in five countries: a time series analysis," which was published in 2023.

Language: R - Size: 74.2 KB - Last synced: about 1 month ago - Pushed: 10 months ago - Stars: 1 - Forks: 0

ihmeuw/85pathogens

Size: 0 Bytes - Last synced: about 1 month ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

ihmeuw/salud_mesoamerica

Language: Stata - Size: 72.3 KB - Last synced: about 1 month ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

ihmeuw/anemia_gbd2021

sharing code for the GBD 2021 anemia paper which will be published in the Lancet Haematology INFR-15310

Language: R - Size: 84 KB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0

ihmeuw/gbdeppaiml Fork of deepajag/gbdeppaiml

HIV estimation analysis for the Global Burden of Disease Study

Language: R - Size: 6.76 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 3 - Forks: 1

ihmeuw/covid-crosscountry-analysis

Language: R - Size: 44.9 KB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 4 - Forks: 2

ihmeuw/mental_disorders

Public code from the Mental Disorders team on the Global Burden of Disease project

Size: 717 KB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 3 - Forks: 2

ihmeuw/covid-usa-resilience

Language: R - Size: 16.6 KB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0

ihmeuw/past_covid_infection_meta_analysis

Language: R - Size: 11.7 KB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 2 - Forks: 1

ihmeuw/rra-doc-template

Documentation Template for Rapid Response and Analytics projects

Language: Python - Size: 28.3 KB - Last synced: about 1 month ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

ihmeuw/test_vivarium_cluster_tools

Test repository for release process improvement

Language: Python - Size: 57.6 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

ihmeuw/vaccines_borno_case_study

Language: R - Size: 753 KB - Last synced: about 1 month ago - Pushed: 11 months ago - Stars: 0 - Forks: 1

ihmeuw/CVDdisparities

Size: 47.9 KB - Last synced: about 1 month ago - Pushed: 11 months ago - Stars: 1 - Forks: 0

ihmeuw/vivarium_gates_nutrition_optimization

Language: Python - Size: 14.7 MB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

ihmeuw/vaccines-zerodose-overlap

Language: R - Size: 482 KB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

ihmeuw/amr

Language: Python - Size: 255 KB - Last synced: about 1 month ago - Pushed: 8 months ago - Stars: 2 - Forks: 1

ihmeuw/vivarium_nih_us_cvd_OLD

Language: Python - Size: 66.4 KB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

ihmeuw/data-science-brown-bag

IHME's weekly Data Science Brown Bag series

Language: HTML - Size: 2.93 MB - Last synced: about 1 month ago - Pushed: about 6 years ago - Stars: 8 - Forks: 8

ihmeuw/steamfitter

Tool for creating and managing high-throughput data and modeling pipelines.

Language: Python - Size: 223 KB - Last synced: 18 days ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

ihmeuw/SmartVA-Analyze

SmartVA-Analyze Desktop Application

Language: Python - Size: 147 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 5 - Forks: 10

ihmeuw/covid-model-deaths-spline

Spline model of past deaths with a limited forecast based on case load.

Language: Python - Size: 28.7 MB - Last synced: about 1 month ago - Pushed: about 3 years ago - Stars: 8 - Forks: 5

ihmeuw/vivarium_data_analysis

Code for analyzing Vivarium output and GBD data for Vivarium input

Language: Jupyter Notebook - Size: 210 MB - Last synced: about 1 month ago - Pushed: 9 months ago - Stars: 0 - Forks: 1

ihmeuw/covid-shared

Shared paths and command-line utilities for the IHME Covid-19 pipeline.

Language: Python - Size: 318 KB - Last synced: 22 days ago - Pushed: over 1 year ago - Stars: 4 - Forks: 5

ihmeuw/glsl-rgba-to-float

WebGL shader function to decode a 32-bit float from the RGBA color channels of a texel

Language: GLSL - Size: 4.88 KB - Last synced: 18 days ago - Pushed: almost 5 years ago - Stars: 17 - Forks: 2

ihmeuw/mena_coverage

Coverage estimation of MenA vaccination in the meningitis belt.

Language: R - Size: 24.4 KB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

ihmeuw/CVD_JACC

Language: R - Size: 41 KB - Last synced: about 1 month ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

ihmeuw/gbd_contraception

Language: R - Size: 75.2 KB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

ihmeuw/vivarium_research_prl

Simulation Science research team repo for probabilistic record linkage project

Language: Jupyter Notebook - Size: 35 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 0 - Forks: 1

ihmeuw/rotavirus_vaccine

Language: Jupyter Notebook - Size: 114 KB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

ihmeuw/ihme.covid

Language: R - Size: 593 KB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 3 - Forks: 1

ihmeuw/vivarium-dashboard Fork of Parallels/rq-dashboard

Flask-based web front-end for monitoring vivarium psimulate queues

Language: Python - Size: 772 KB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

ihmeuw/vivarium_research_nih_us_cvd

Research repository for CVD model

Language: Jupyter Notebook - Size: 802 MB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 0 - Forks: 1

ihmeuw/cascade-at

Multi-stage hierarchical estimation of disease processes on demographic observations

Language: Python - Size: 6.51 MB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 3 - Forks: 6

ihmeuw/leaflet.tilelayer.glcolorscale

Custom Leaflet TileLayer using WebGL to colorize pixels according to a specified color scale

Language: TypeScript - Size: 2.88 MB - Last synced: 19 days ago - Pushed: over 1 year ago - Stars: 10 - Forks: 2

ihmeuw/vivarium_gates_bep

Language: Python - Size: 310 KB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

ihmeuw/vivarium_csu_ltbi

Language: Python - Size: 22.7 MB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 1 - Forks: 1

ihmeuw/CVD_disparities

Size: 0 Bytes - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

ihmeuw/GVObstetricMortality

Size: 0 Bytes - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

ihmeuw/hssa_hrh

Language: R - Size: 54.7 KB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

ihmeuw/hale_decomp

Language: R - Size: 193 KB - Last synced: about 1 month ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

ihmeuw/fhs_2019_population_paper

GATHER compliant code for FHS 2019 population forecast

Language: Python - Size: 5.78 MB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 4 - Forks: 1

ihmeuw/outcome_adj_hc_price_index

Outcome adjusted health care price index

Language: R - Size: 5.86 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

ihmeuw/covid-model-deaths

The IHME Covid-19 Statistical deaths model

Language: Jupyter Notebook - Size: 515 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 16 - Forks: 4

ihmeuw/covid-historical-model

IHME empirical model of past COVID-19 infections, confirmed cases, hospitalizations, and deaths.

Language: Python - Size: 362 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 2 - Forks: 1

ihmeuw/covid-model-infections

IHME COVID-19 past infections model

Language: Python - Size: 294 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

ihmeuw/vivarium_gates_child_iv_iron

Language: Python - Size: 630 KB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

ihmeuw/vivarium_gates_child_iv_iron_temp

Language: Python - Size: 24.4 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

ihmeuw/cgf

Language: R - Size: 192 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

ihmeuw/wkb-raster

JavaScript parser for the Well-Known Binary (WKB) RASTER type used in PostGIS

Language: TypeScript - Size: 31.3 KB - Last synced: 17 days ago - Pushed: about 1 year ago - Stars: 5 - Forks: 0

ihmeuw/covid-age-patterns

Language: R - Size: 38.1 KB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

ihmeuw/clean-extracted-sr-data

Work to help clean, validate, and document datasets extracted from scientific literature during systematic reviews, as prep for upload to a research database.

Language: R - Size: 20.5 KB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

ihmeuw/vivarium_ciff_sam

Language: Python - Size: 271 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

ihmeuw/vivarium_conic_vitamin_a_supp

Language: Jupyter Notebook - Size: 1.37 MB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

ihmeuw/vivarium_conic_vitamin_a_supp_gbd2019

Language: Python - Size: 20.5 KB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

ihmeuw/vivarium_gates_iv_iron

Language: Python - Size: 15.6 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

ihmeuw/vivarium_research_template

Language: Python - Size: 180 KB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 0 - Forks: 1

ihmeuw/cost_effectiveness_hpv_vax_metareg

Language: Python - Size: 23.4 KB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

ihmeuw/CODEm-2010

Cause of Death Ensemble Model

Language: Stata - Size: 180 KB - Last synced: about 1 month ago - Pushed: about 9 years ago - Stars: 2 - Forks: 4

ihmeuw/vivarium_compass_sam

Language: Python - Size: 232 KB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0