imperial-genomics-facility/data-management-python

Python library for running data analysis pipelines for IGF team

Language: Python - Size: 2.95 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 4 - Forks: 2

imperial-genomics-facility/igf-dockerfiles

A list of dockerfiles for Docker and singularity image building

Language: Jupyter Notebook - Size: 138 KB - Last synced: 15 days ago - Pushed: 16 days ago - Stars: 0 - Forks: 0

imperial-genomics-facility/IGFPortal

Language: HTML - Size: 410 KB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 0 - Forks: 0

imperial-genomics-facility/spark-notebook-image 📦

A repository for running Apache Spark via Jupyter notebook

Language: Dockerfile - Size: 17.6 KB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/hail-notebook-image 📦

A repository for keeping conda env and docker image file for running single cell analysis using Hail.is

Language: Dockerfile - Size: 931 KB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/viral-genome-notebook-image 📦

A repo for keeping notebooks for viral genome analysis and data visualization

Language: Dockerfile - Size: 1.48 MB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 0 - Forks: 1

imperial-genomics-facility/sample_tracking_database 📦

A database for tracking sample information in the lab

Language: Python - Size: 92.8 KB - Last synced: about 1 month ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/Metadata_validation_docker 📦

A docker file for metadata validation server

Language: Dockerfile - Size: 35.2 KB - Last synced: about 1 month ago - Pushed: about 4 years ago - Stars: 0 - Forks: 1

imperial-genomics-facility/igf-pipelines 📦

A repository of pipelines and scripts for Imperial BRC Genomics Facility team

Language: Perl - Size: 360 KB - Last synced: about 1 month ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

imperial-genomics-facility/singlecell-notebooks-image 📦

A repository for storing conda env and docker image file for running single cell analysis

Language: Dockerfile - Size: 41 KB - Last synced: about 1 month ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/internal-dashboard 📦

Language: TypeScript - Size: 261 KB - Last synced: about 1 month ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/igf-airflow-docker 📦

A IGF specific docker image for Apache airflow server

Language: Shell - Size: 50.8 KB - Last synced: about 1 month ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/guihivedockerimage 📦

A docker image for running guiHive server

Language: Dockerfile - Size: 7.81 KB - Last synced: about 1 month ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/LiteratureCuration 📦

A repository for curating publication literature for facility users

Language: Python - Size: 9.77 KB - Last synced: about 1 month ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/IGFTweetBot 📦

A repository for IGF team specific Tweet bot codes.

Language: Python - Size: 22.5 KB - Last synced: about 1 month ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/IGFSlackBot 📦

A repository for IGF team specific Slack bot codes.

Language: Python - Size: 11.7 KB - Last synced: about 1 month ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/data-management 📦

Data management system for NGS data

Language: JavaScript - Size: 31.8 MB - Last synced: about 1 month ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/workflows 📦

HPC workflows for NGS data analysis

Language: Shell - Size: 833 KB - Last synced: about 1 month ago - Pushed: about 7 years ago - Stars: 0 - Forks: 1

imperial-genomics-facility/Metadata_validation 📦

A flask based metadata validation server

Language: Python - Size: 2.83 MB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/igf-airflow-hpc

Airflow dags and scripts for HPC

Language: Python - Size: 423 KB - Last synced: 23 days ago - Pushed: 24 days ago - Stars: 3 - Forks: 0

imperial-genomics-facility/igf-pipeline-help

A repository for keeping help documentation of IGF pipelines

Language: HTML - Size: 1.9 MB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 1 - Forks: 1

imperial-genomics-facility/scanpy-notebook-image

A repository for keeping conda env and docker image file for running single cell analysis using scanpy

Language: Jupyter Notebook - Size: 10.4 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 4 - Forks: 3

imperial-genomics-facility/rnaseq-notebook-image

A repository for keeping conda env and docker image file for running RNA-Seq analysis

Language: Dockerfile - Size: 269 KB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

imperial-genomics-facility/igf-analysis

A repository for storing analysis scripts

Language: Jupyter Notebook - Size: 18.6 KB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/pipeline_tutorial_notebooks

Jupyter notebook based tutorial for Nextflow

Language: Jupyter Notebook - Size: 47.9 KB - Last synced: about 1 month ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

imperial-genomics-facility/interop-notebook-image

A repository for keeping notebooks for Interop data processing

Language: Python - Size: 107 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/seurat-notebook-image

A repository for keeping conda env and docker image file for running single cell analysis using Seurat

Language: Jupyter Notebook - Size: 7.95 MB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/scirpy-notebook-image

A repository for keeping conda env and docker image file for running single cell analysis using scirpy

Language: Jupyter Notebook - Size: 2.17 MB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/demultiplexing_report

A repository for storing codes for de-multiplexing report generaltion

Language: Python - Size: 163 KB - Last synced: about 1 month ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

imperial-genomics-facility/base-notebook-image

A repository for keeping conda env and docker files for the base notebook container image

Language: Dockerfile - Size: 45.9 KB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/igf-airflow-scripts

A repository for keeping scripts for running Apache Airflow based pipeline for IGF

Language: Python - Size: 32.2 KB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/igftools-kube-deploy

IGFtools server deployment using Kubernetes

Size: 5.86 KB - Last synced: about 1 month ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/LimsMetadataParsing

A pyspark based codebase for fetching and formatting metadata from a LIMS db for IGF

Language: Python - Size: 42 KB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/IlluminaDemultiplexingReportSpark

A repository for generating de-multiplexing report for Illumina sequencing runs using Pyspark

Language: Python - Size: 8.79 KB - Last synced: about 1 month ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/igf-basespace

A repository for keeping Illumina Basespace specific codes for IGF team

Language: Python - Size: 7.81 KB - Last synced: about 1 month ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

imperial-genomics-facility/imperial-genomics-facility.github.io

Imperial Genomics Facility Git Hub Pages

Language: HTML - Size: 47.9 KB - Last synced: about 1 month ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0