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GitHub / insightsengineering 53 Repositories

Roche/Genentech - Insights Engineering

Donate: https://pharmaverse.org

insightsengineering/teal.gallery

A Gallery of Exploratory Web Apps used for Analyzing Clinical Trial Data

Language: R - Size: 58.2 MB - Last synced at: about 5 hours ago - Pushed at: about 5 hours ago - Stars: 33 - Forks: 9

insightsengineering/standalone

Standalone scripts for R package development

Language: R - Size: 1.77 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 1 - Forks: 0

insightsengineering/cards

CDISC Analysis Results Data

Language: R - Size: 67.3 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 41 - Forks: 3

insightsengineering/crane

Supplement to functions found in the {gtsummary} R package

Language: R - Size: 4.17 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 4 - Forks: 0

insightsengineering/teal

Exploratory Web Apps for Analyzing Clinical Trial Data

Language: R - Size: 87.5 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 210 - Forks: 45

insightsengineering/autoslider.core

autoslideR core

Language: R - Size: 12.5 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 4 - Forks: 1

insightsengineering/cardx

R Package to Supplement ARD Functions Found in {cards}

Language: R - Size: 30.3 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 19 - Forks: 3

insightsengineering/locksmith

renv.lock generator

Language: Go - Size: 376 KB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 1 - Forks: 0

insightsengineering/git-synchronizer

A tool to synchronize git repositories

Language: Go - Size: 149 KB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 1 - Forks: 0

insightsengineering/tlg-catalog

A catalog of Tables, Listings and Graphs (TLGs) created with NEST R packages

Language: Lua - Size: 1.45 GB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 27 - Forks: 10

insightsengineering/rtables.officer

Reporting tables with R, with officeR support

Language: R - Size: 18.1 MB - Last synced at: 20 days ago - Pushed at: 21 days ago - Stars: 1 - Forks: 0

insightsengineering/dunlin

Tools for Clinical Trial Data Wrangling

Language: R - Size: 14.2 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 4 - Forks: 0

insightsengineering/oasbinder

A tool to interact with OAS docs for multiple microservices

Language: Go - Size: 120 KB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 1 - Forks: 0

insightsengineering/rtables

Reporting tables with R

Language: R - Size: 119 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 238 - Forks: 51

insightsengineering/rlistings

Value formatting and ASCII rendering infrastructure for tables and listings.

Language: R - Size: 23 MB - Last synced at: 9 days ago - Pushed at: 10 days ago - Stars: 28 - Forks: 5

insightsengineering/teal.modules.clinical

Provides teal modules for the standard clinical trials outputs

Language: R - Size: 81.8 MB - Last synced at: 26 days ago - Pushed at: 27 days ago - Stars: 38 - Forks: 18

insightsengineering/teal.modules.general

General Purpose Teal Modules

Language: R - Size: 49.1 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 13 - Forks: 15

insightsengineering/teal.widgets

shiny widgets for teal applications

Language: R - Size: 16.6 MB - Last synced at: 26 days ago - Pushed at: 27 days ago - Stars: 5 - Forks: 6

insightsengineering/r.pkg.template

An opinionated R package template with CI/CD built-in

Language: Shell - Size: 2.07 MB - Last synced at: 1 day ago - Pushed at: 29 days ago - Stars: 42 - Forks: 18

insightsengineering/tern

Table, Listings, and Graphs (TLG) library for common outputs used in clinical trials

Language: R - Size: 282 MB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 85 - Forks: 25

insightsengineering/teal.modules.hermes

RNA-seq analysis modules to add to a teal application

Language: R - Size: 21.9 MB - Last synced at: 26 days ago - Pushed at: 27 days ago - Stars: 7 - Forks: 1

insightsengineering/ard-catalog

Catalog of QC comparison of rtables using {cards} and {cardx}

Language: R - Size: 1.83 MB - Last synced at: 4 days ago - Pushed at: 28 days ago - Stars: 1 - Forks: 0

insightsengineering/roxy.shinylive

roxygen2 extensions for shinylive

Language: JavaScript - Size: 7.96 MB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 12 - Forks: 2

insightsengineering/chevron

Standard TLGs For Clinical Trials Reporting

Language: R - Size: 147 MB - Last synced at: 26 days ago - Pushed at: about 1 month ago - Stars: 15 - Forks: 1

insightsengineering/formatters

A framework for creating listings of raw data that include specialized formatting, headers, footers, referential footnotes, and pagination.

Language: R - Size: 32 MB - Last synced at: 26 days ago - Pushed at: 29 days ago - Stars: 18 - Forks: 7

insightsengineering/teal.modules.bsafe

Teal modules for bsafe

Language: R - Size: 10.1 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

insightsengineering/scda.test

Package that runs tests for tern and scda

Language: R - Size: 10.4 MB - Last synced at: 26 days ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0

insightsengineering/sasr

sasr

Language: R - Size: 2.2 MB - Last synced at: 26 days ago - Pushed at: about 1 month ago - Stars: 16 - Forks: 2

insightsengineering/teal.data

Data model for teal applications

Language: R - Size: 34.6 MB - Last synced at: 26 days ago - Pushed at: about 1 month ago - Stars: 11 - Forks: 9

insightsengineering/ci-images

Insights Engineering Container Images

Language: R - Size: 296 KB - Last synced at: 26 days ago - Pushed at: about 1 month ago - Stars: 11 - Forks: 2

insightsengineering/thevalidatoR

Github Action that generates R Package Validation documentation 🏁

Language: R - Size: 660 KB - Last synced at: about 21 hours ago - Pushed at: 29 days ago - Stars: 62 - Forks: 5

insightsengineering/teal.goshawk

Modules that produce web interfaces through which longitudinal visualizations can be dynamically

Language: R - Size: 16.5 MB - Last synced at: about 20 hours ago - Pushed at: about 20 hours ago - Stars: 3 - Forks: 2

insightsengineering/presidio-action

Github Action that analyze Text for PII Entities with Microsoft Presidio framework.

Size: 38.1 KB - Last synced at: 17 days ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 2

insightsengineering/teal.transform

Reproducible transform and merge module for teal applications

Language: R - Size: 27.2 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 3 - Forks: 3

insightsengineering/random.cdisc.data

Create random CDISC data

Language: R - Size: 71.9 MB - Last synced at: about 4 hours ago - Pushed at: 3 months ago - Stars: 35 - Forks: 9

insightsengineering/tern.mmrm

Create MMRM TLGs using lme4 and tern

Language: R - Size: 13.6 MB - Last synced at: 26 days ago - Pushed at: about 2 months ago - Stars: 6 - Forks: 3

insightsengineering/teal.slice

Reproducible slice module for teal applications

Language: R - Size: 62.6 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 11 - Forks: 6

insightsengineering/tern.gee

Create TLGs using Generalized Estimating Equations (GEE)

Language: R - Size: 10.1 MB - Last synced at: 26 days ago - Pushed at: about 2 months ago - Stars: 8 - Forks: 2

insightsengineering/scribe

System Compatibility Reports for Install & Build Evaluation

Language: Go - Size: 1.19 MB - Last synced at: 26 days ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 0

insightsengineering/rbmi

Reference based multiple imputation R package

Language: R - Size: 16.7 MB - Last synced at: 5 days ago - Pushed at: 2 months ago - Stars: 18 - Forks: 9

insightsengineering/teal.reporter

Create and preview reports with Shiny modules

Language: R - Size: 22 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 8 - Forks: 10

insightsengineering/pip-action Fork of BSFishy/pip-action

Github Action to install Python PIP packages 🐍 📦

Language: TypeScript - Size: 170 KB - Last synced at: 19 days ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 2

insightsengineering/tern.rbmi

Create TLGs using rbmi and tern

Language: R - Size: 13.6 MB - Last synced at: 26 days ago - Pushed at: 2 months ago - Stars: 3 - Forks: 1

insightsengineering/table.drawing.research

Table engine output experimentation

Language: R - Size: 1.99 MB - Last synced at: 4 days ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

insightsengineering/coverage-action

Github Action that generates a coverage summary using a Cobertura XML report

Size: 209 KB - Last synced at: 26 days ago - Pushed at: 10 months ago - Stars: 19 - Forks: 8

insightsengineering/teal.osprey

Community efforts to collect teal modules for TLGs defined in the osprey package

Language: R - Size: 18.2 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 5 - Forks: 2

insightsengineering/goshawk

Functions that plot and summarize biomarkers/labs of interest

Language: R - Size: 28.6 MB - Last synced at: 26 days ago - Pushed at: 2 months ago - Stars: 5 - Forks: 1

insightsengineering/osprey

Community effort to collect TLG code and create a catalogue

Language: R - Size: 45 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 4 - Forks: 1

insightsengineering/r-revdepcheck-action

GitHub Action for reverse dependency check of R packages

Language: R - Size: 20.5 KB - Last synced at: 3 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0

insightsengineering/teal.code

Code storage and execution class for teal applications

Language: R - Size: 17.6 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 12 - Forks: 8

insightsengineering/teal.logger

Logging setup for the teal family of packages

Language: R - Size: 10.9 MB - Last synced at: 26 days ago - Pushed at: 3 months ago - Stars: 5 - Forks: 3

insightsengineering/simIDM

Simulation Engine for Multistate Models

Language: R - Size: 4.04 MB - Last synced at: 26 days ago - Pushed at: 3 months ago - Stars: 13 - Forks: 1

insightsengineering/bsafe

TBD

Language: R - Size: 11 MB - Last synced at: 26 days ago - Pushed at: 3 months ago - Stars: 2 - Forks: 1

insightsengineering/biomarker-catalog

Biomarker Analysis Templates of Tables And Graphs 📊

Language: SCSS - Size: 105 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 9 - Forks: 2

insightsengineering/vizard

🧙‍♂️

Language: R - Size: 1.36 MB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

insightsengineering/nest

Website for the Nest project 🪺

Language: JavaScript - Size: 45.4 MB - Last synced at: 26 days ago - Pushed at: 8 months ago - Stars: 5 - Forks: 3

insightsengineering/hermes

Preprocessing, analyzing, and reporting of RNA-seq data

Language: R - Size: 53.2 MB - Last synced at: 26 days ago - Pushed at: about 2 months ago - Stars: 11 - Forks: 2

insightsengineering/nestcolor

Package managing visual conventions of NEST graphs

Language: R - Size: 10.3 MB - Last synced at: 26 days ago - Pushed at: 3 months ago - Stars: 5 - Forks: 3

insightsengineering/presidio-cli

CLI tool that analyze Text for PII Entities with Microsoft Presidio framework.

Language: Python - Size: 137 KB - Last synced at: 26 days ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 3

insightsengineering/r-pkgdown-multiversion

Github Action to generate multiple versions of pkgdown docs for R packages

Language: Python - Size: 94.7 KB - Last synced at: 11 days ago - Pushed at: 4 months ago - Stars: 5 - Forks: 0

insightsengineering/hex-stickers

hex sticker archive

Language: R - Size: 45.7 MB - Last synced at: 26 days ago - Pushed at: 4 months ago - Stars: 8 - Forks: 1

insightsengineering/ggplot2.utils

Utilities, in particular geoms and stats, for use with ggplot2

Language: R - Size: 11.6 MB - Last synced at: 26 days ago - Pushed at: 5 months ago - Stars: 6 - Forks: 0

insightsengineering/scda 📦

Access Synthetic CDISC Data from Archive Packages

Language: R - Size: 9.86 MB - Last synced at: 26 days ago - Pushed at: 9 months ago - Stars: 12 - Forks: 5

insightsengineering/bonsaiforest

Language: R - Size: 223 MB - Last synced at: 26 days ago - Pushed at: 5 months ago - Stars: 3 - Forks: 1

insightsengineering/.github

Community health files for the @insightsengineering organization

Size: 104 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

insightsengineering/insightsengineering.r-universe.dev

Stable cohort of packages originating from this organization

Size: 12.7 KB - Last synced at: 3 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

insightsengineering/r-license-report

Github Action to generate an R Package Dependencies' License Report

Language: R - Size: 86.9 KB - Last synced at: 7 days ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 2

insightsengineering/setup-r-dependencies

GitHub Action to install R package dependencies

Size: 61.5 KB - Last synced at: 3 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

insightsengineering/unihtee

Tools for uncovering treatment effect modifiers in high-dimensional data.

Language: R - Size: 781 KB - Last synced at: 28 days ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 0

insightsengineering/r-image-creator

Github Action to create R-based Docker images

Language: Shell - Size: 66.4 KB - Last synced at: 26 days ago - Pushed at: 6 months ago - Stars: 2 - Forks: 1

insightsengineering/JointSurvivalModels.jl

Julia implementation of joint models combining longitudinal and survival endpoints

Language: Julia - Size: 412 KB - Last synced at: 26 days ago - Pushed at: about 1 year ago - Stars: 13 - Forks: 0

insightsengineering/rvalidationhub-packages

Snapshot of validated R packages for R validation hub

Language: HTML - Size: 1.22 MB - Last synced at: 3 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0

insightsengineering/verdepcheck

An R package that tests your R package against the min/max versions of specified dependencies

Language: R - Size: 721 KB - Last synced at: 26 days ago - Pushed at: 4 months ago - Stars: 7 - Forks: 0

insightsengineering/nesttemplate

pkgdown template for NEST packages

Language: JavaScript - Size: 1.19 MB - Last synced at: 26 days ago - Pushed at: 8 months ago - Stars: 2 - Forks: 0

insightsengineering/scda.2022 📦

An archive of synthetic CDISC data for 2022

Language: R - Size: 141 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 9 - Forks: 3

insightsengineering/r-spellcheck-action

Github Action that performs a spell check on an R package

Language: R - Size: 47.9 KB - Last synced at: 26 days ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 0

insightsengineering/teal.connectors.ssh

Teal connector to access data via ssh

Language: R - Size: 1.2 MB - Last synced at: 2 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 0

insightsengineering/staged-dependencies-action

Github Action to implement R development stages for package development

Language: R - Size: 103 KB - Last synced at: 26 days ago - Pushed at: 10 months ago - Stars: 3 - Forks: 2

insightsengineering/junit-xml-diff

Tool for comparing JUnit XML reports

Language: Go - Size: 47.9 KB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

insightsengineering/r-verdepcheck-action

Github Action to check if R package works correctly with minimum version of dependencies installed

Language: R - Size: 46.9 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1

insightsengineering/nestdevs-tasks

Size: 0 Bytes - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

insightsengineering/pattern-strip

Pattern Strip Extension For Quarto

Language: Lua - Size: 3.91 KB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

insightsengineering/nest-2023-summeR

Language: JavaScript - Size: 20.8 MB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

insightsengineering/covtracer-action

Github Action based on the Covtracer R package

Language: R - Size: 12.7 KB - Last synced at: 1 day ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

insightsengineering/julia-images

Insights Engineering Julia Images

Language: Shell - Size: 6.84 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

insightsengineering/framework-scientific-apps

AMIA 2021 - Case study in the development of a framework for quality and reproducibility in inner-sourced packages and self-service analytic dashboards

Language: TeX - Size: 749 KB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

insightsengineering/disk-space-reclaimer Fork of jlumbroso/free-disk-space

GitHub Action to free disk space on a Ubuntu runners 🗑️

Language: Shell - Size: 27.3 KB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 1

insightsengineering/bioc-check-action

Github Action that runs Bioconductor-specific R package checks with BiocCheck.

Language: R - Size: 21.5 KB - Last synced at: 17 days ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 2

insightsengineering/release-existence-action

Github Action that checks if a release for given tag exists

Size: 7.81 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

insightsengineering/cran-status-monitor

Github Action to check for issues reported on CRAN status page

Language: R - Size: 26.4 KB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

insightsengineering/uniCATE

Univariate conditional average treatment effect estimation for predictive biomarker discovery

Language: R - Size: 558 KB - Last synced at: 26 days ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 1

insightsengineering/testdepth

An R package that lets you specify a testing depth for your unit tests

Size: 5.86 KB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

insightsengineering/scda.2021 📦

An archive of synthetic CDISC data for 2021

Language: R - Size: 37.6 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 1

insightsengineering/depository

A depository for previously released R packages stemming from this organization.

Language: HTML - Size: 97.1 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 1

insightsengineering/codecollaboration 📦

Language: HTML - Size: 31.2 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 2

insightsengineering/posters

Miscellaneous posters and fliers

Size: 10.2 MB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

insightsengineering/NEST-roadmap

Size: 0 Bytes - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

insightsengineering/crmPack Fork of Roche/crmPack

Object-Oriented Implementation of CRM Designs

Language: R - Size: 61.1 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0