GitHub / insightsengineering 53 Repositories
Roche/Genentech - Insights Engineering
Donate: https://pharmaverse.org
insightsengineering/teal.gallery
A Gallery of Exploratory Web Apps used for Analyzing Clinical Trial Data
Language: R - Size: 58.2 MB - Last synced at: about 5 hours ago - Pushed at: about 5 hours ago - Stars: 33 - Forks: 9

insightsengineering/standalone
Standalone scripts for R package development
Language: R - Size: 1.77 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 1 - Forks: 0

insightsengineering/cards
CDISC Analysis Results Data
Language: R - Size: 67.3 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 41 - Forks: 3

insightsengineering/crane
Supplement to functions found in the {gtsummary} R package
Language: R - Size: 4.17 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 4 - Forks: 0

insightsengineering/teal
Exploratory Web Apps for Analyzing Clinical Trial Data
Language: R - Size: 87.5 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 210 - Forks: 45

insightsengineering/autoslider.core
autoslideR core
Language: R - Size: 12.5 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 4 - Forks: 1

insightsengineering/cardx
R Package to Supplement ARD Functions Found in {cards}
Language: R - Size: 30.3 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 19 - Forks: 3

insightsengineering/locksmith
renv.lock generator
Language: Go - Size: 376 KB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 1 - Forks: 0

insightsengineering/git-synchronizer
A tool to synchronize git repositories
Language: Go - Size: 149 KB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 1 - Forks: 0

insightsengineering/tlg-catalog
A catalog of Tables, Listings and Graphs (TLGs) created with NEST R packages
Language: Lua - Size: 1.45 GB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 27 - Forks: 10

insightsengineering/rtables.officer
Reporting tables with R, with officeR support
Language: R - Size: 18.1 MB - Last synced at: 20 days ago - Pushed at: 21 days ago - Stars: 1 - Forks: 0

insightsengineering/dunlin
Tools for Clinical Trial Data Wrangling
Language: R - Size: 14.2 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 4 - Forks: 0

insightsengineering/oasbinder
A tool to interact with OAS docs for multiple microservices
Language: Go - Size: 120 KB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 1 - Forks: 0

insightsengineering/rtables
Reporting tables with R
Language: R - Size: 119 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 238 - Forks: 51

insightsengineering/rlistings
Value formatting and ASCII rendering infrastructure for tables and listings.
Language: R - Size: 23 MB - Last synced at: 9 days ago - Pushed at: 10 days ago - Stars: 28 - Forks: 5

insightsengineering/teal.modules.clinical
Provides teal modules for the standard clinical trials outputs
Language: R - Size: 81.8 MB - Last synced at: 26 days ago - Pushed at: 27 days ago - Stars: 38 - Forks: 18

insightsengineering/teal.modules.general
General Purpose Teal Modules
Language: R - Size: 49.1 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 13 - Forks: 15

insightsengineering/teal.widgets
shiny widgets for teal applications
Language: R - Size: 16.6 MB - Last synced at: 26 days ago - Pushed at: 27 days ago - Stars: 5 - Forks: 6

insightsengineering/r.pkg.template
An opinionated R package template with CI/CD built-in
Language: Shell - Size: 2.07 MB - Last synced at: 1 day ago - Pushed at: 29 days ago - Stars: 42 - Forks: 18

insightsengineering/tern
Table, Listings, and Graphs (TLG) library for common outputs used in clinical trials
Language: R - Size: 282 MB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 85 - Forks: 25

insightsengineering/teal.modules.hermes
RNA-seq analysis modules to add to a teal application
Language: R - Size: 21.9 MB - Last synced at: 26 days ago - Pushed at: 27 days ago - Stars: 7 - Forks: 1

insightsengineering/ard-catalog
Catalog of QC comparison of rtables using {cards} and {cardx}
Language: R - Size: 1.83 MB - Last synced at: 4 days ago - Pushed at: 28 days ago - Stars: 1 - Forks: 0

insightsengineering/roxy.shinylive
roxygen2 extensions for shinylive
Language: JavaScript - Size: 7.96 MB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 12 - Forks: 2

insightsengineering/chevron
Standard TLGs For Clinical Trials Reporting
Language: R - Size: 147 MB - Last synced at: 26 days ago - Pushed at: about 1 month ago - Stars: 15 - Forks: 1

insightsengineering/formatters
A framework for creating listings of raw data that include specialized formatting, headers, footers, referential footnotes, and pagination.
Language: R - Size: 32 MB - Last synced at: 26 days ago - Pushed at: 29 days ago - Stars: 18 - Forks: 7

insightsengineering/teal.modules.bsafe
Teal modules for bsafe
Language: R - Size: 10.1 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

insightsengineering/scda.test
Package that runs tests for tern and scda
Language: R - Size: 10.4 MB - Last synced at: 26 days ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0

insightsengineering/sasr
sasr
Language: R - Size: 2.2 MB - Last synced at: 26 days ago - Pushed at: about 1 month ago - Stars: 16 - Forks: 2

insightsengineering/teal.data
Data model for teal applications
Language: R - Size: 34.6 MB - Last synced at: 26 days ago - Pushed at: about 1 month ago - Stars: 11 - Forks: 9

insightsengineering/ci-images
Insights Engineering Container Images
Language: R - Size: 296 KB - Last synced at: 26 days ago - Pushed at: about 1 month ago - Stars: 11 - Forks: 2

insightsengineering/thevalidatoR
Github Action that generates R Package Validation documentation 🏁
Language: R - Size: 660 KB - Last synced at: about 21 hours ago - Pushed at: 29 days ago - Stars: 62 - Forks: 5

insightsengineering/teal.goshawk
Modules that produce web interfaces through which longitudinal visualizations can be dynamically
Language: R - Size: 16.5 MB - Last synced at: about 20 hours ago - Pushed at: about 20 hours ago - Stars: 3 - Forks: 2

insightsengineering/presidio-action
Github Action that analyze Text for PII Entities with Microsoft Presidio framework.
Size: 38.1 KB - Last synced at: 17 days ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 2

insightsengineering/teal.transform
Reproducible transform and merge module for teal applications
Language: R - Size: 27.2 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 3 - Forks: 3

insightsengineering/random.cdisc.data
Create random CDISC data
Language: R - Size: 71.9 MB - Last synced at: about 4 hours ago - Pushed at: 3 months ago - Stars: 35 - Forks: 9

insightsengineering/tern.mmrm
Create MMRM TLGs using lme4 and tern
Language: R - Size: 13.6 MB - Last synced at: 26 days ago - Pushed at: about 2 months ago - Stars: 6 - Forks: 3

insightsengineering/teal.slice
Reproducible slice module for teal applications
Language: R - Size: 62.6 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 11 - Forks: 6

insightsengineering/tern.gee
Create TLGs using Generalized Estimating Equations (GEE)
Language: R - Size: 10.1 MB - Last synced at: 26 days ago - Pushed at: about 2 months ago - Stars: 8 - Forks: 2

insightsengineering/scribe
System Compatibility Reports for Install & Build Evaluation
Language: Go - Size: 1.19 MB - Last synced at: 26 days ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 0

insightsengineering/rbmi
Reference based multiple imputation R package
Language: R - Size: 16.7 MB - Last synced at: 5 days ago - Pushed at: 2 months ago - Stars: 18 - Forks: 9

insightsengineering/teal.reporter
Create and preview reports with Shiny modules
Language: R - Size: 22 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 8 - Forks: 10

insightsengineering/pip-action Fork of BSFishy/pip-action
Github Action to install Python PIP packages 🐍 📦
Language: TypeScript - Size: 170 KB - Last synced at: 19 days ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 2

insightsengineering/tern.rbmi
Create TLGs using rbmi and tern
Language: R - Size: 13.6 MB - Last synced at: 26 days ago - Pushed at: 2 months ago - Stars: 3 - Forks: 1

insightsengineering/table.drawing.research
Table engine output experimentation
Language: R - Size: 1.99 MB - Last synced at: 4 days ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

insightsengineering/coverage-action
Github Action that generates a coverage summary using a Cobertura XML report
Size: 209 KB - Last synced at: 26 days ago - Pushed at: 10 months ago - Stars: 19 - Forks: 8

insightsengineering/teal.osprey
Community efforts to collect teal modules for TLGs defined in the osprey package
Language: R - Size: 18.2 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 5 - Forks: 2

insightsengineering/goshawk
Functions that plot and summarize biomarkers/labs of interest
Language: R - Size: 28.6 MB - Last synced at: 26 days ago - Pushed at: 2 months ago - Stars: 5 - Forks: 1

insightsengineering/osprey
Community effort to collect TLG code and create a catalogue
Language: R - Size: 45 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 4 - Forks: 1

insightsengineering/r-revdepcheck-action
GitHub Action for reverse dependency check of R packages
Language: R - Size: 20.5 KB - Last synced at: 3 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0

insightsengineering/teal.code
Code storage and execution class for teal applications
Language: R - Size: 17.6 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 12 - Forks: 8

insightsengineering/teal.logger
Logging setup for the teal family of packages
Language: R - Size: 10.9 MB - Last synced at: 26 days ago - Pushed at: 3 months ago - Stars: 5 - Forks: 3

insightsengineering/simIDM
Simulation Engine for Multistate Models
Language: R - Size: 4.04 MB - Last synced at: 26 days ago - Pushed at: 3 months ago - Stars: 13 - Forks: 1

insightsengineering/bsafe
TBD
Language: R - Size: 11 MB - Last synced at: 26 days ago - Pushed at: 3 months ago - Stars: 2 - Forks: 1

insightsengineering/biomarker-catalog
Biomarker Analysis Templates of Tables And Graphs 📊
Language: SCSS - Size: 105 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 9 - Forks: 2

insightsengineering/vizard
🧙♂️
Language: R - Size: 1.36 MB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

insightsengineering/nest
Website for the Nest project 🪺
Language: JavaScript - Size: 45.4 MB - Last synced at: 26 days ago - Pushed at: 8 months ago - Stars: 5 - Forks: 3

insightsengineering/hermes
Preprocessing, analyzing, and reporting of RNA-seq data
Language: R - Size: 53.2 MB - Last synced at: 26 days ago - Pushed at: about 2 months ago - Stars: 11 - Forks: 2

insightsengineering/nestcolor
Package managing visual conventions of NEST graphs
Language: R - Size: 10.3 MB - Last synced at: 26 days ago - Pushed at: 3 months ago - Stars: 5 - Forks: 3

insightsengineering/presidio-cli
CLI tool that analyze Text for PII Entities with Microsoft Presidio framework.
Language: Python - Size: 137 KB - Last synced at: 26 days ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 3

insightsengineering/r-pkgdown-multiversion
Github Action to generate multiple versions of pkgdown docs for R packages
Language: Python - Size: 94.7 KB - Last synced at: 11 days ago - Pushed at: 4 months ago - Stars: 5 - Forks: 0

insightsengineering/hex-stickers
hex sticker archive
Language: R - Size: 45.7 MB - Last synced at: 26 days ago - Pushed at: 4 months ago - Stars: 8 - Forks: 1

insightsengineering/ggplot2.utils
Utilities, in particular geoms and stats, for use with ggplot2
Language: R - Size: 11.6 MB - Last synced at: 26 days ago - Pushed at: 5 months ago - Stars: 6 - Forks: 0

insightsengineering/scda 📦
Access Synthetic CDISC Data from Archive Packages
Language: R - Size: 9.86 MB - Last synced at: 26 days ago - Pushed at: 9 months ago - Stars: 12 - Forks: 5

insightsengineering/bonsaiforest
Language: R - Size: 223 MB - Last synced at: 26 days ago - Pushed at: 5 months ago - Stars: 3 - Forks: 1

insightsengineering/.github
Community health files for the @insightsengineering organization
Size: 104 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

insightsengineering/insightsengineering.r-universe.dev
Stable cohort of packages originating from this organization
Size: 12.7 KB - Last synced at: 3 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

insightsengineering/r-license-report
Github Action to generate an R Package Dependencies' License Report
Language: R - Size: 86.9 KB - Last synced at: 7 days ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 2

insightsengineering/setup-r-dependencies
GitHub Action to install R package dependencies
Size: 61.5 KB - Last synced at: 3 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

insightsengineering/unihtee
Tools for uncovering treatment effect modifiers in high-dimensional data.
Language: R - Size: 781 KB - Last synced at: 28 days ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 0

insightsengineering/r-image-creator
Github Action to create R-based Docker images
Language: Shell - Size: 66.4 KB - Last synced at: 26 days ago - Pushed at: 6 months ago - Stars: 2 - Forks: 1

insightsengineering/JointSurvivalModels.jl
Julia implementation of joint models combining longitudinal and survival endpoints
Language: Julia - Size: 412 KB - Last synced at: 26 days ago - Pushed at: about 1 year ago - Stars: 13 - Forks: 0

insightsengineering/rvalidationhub-packages
Snapshot of validated R packages for R validation hub
Language: HTML - Size: 1.22 MB - Last synced at: 3 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0

insightsengineering/verdepcheck
An R package that tests your R package against the min/max versions of specified dependencies
Language: R - Size: 721 KB - Last synced at: 26 days ago - Pushed at: 4 months ago - Stars: 7 - Forks: 0

insightsengineering/nesttemplate
pkgdown template for NEST packages
Language: JavaScript - Size: 1.19 MB - Last synced at: 26 days ago - Pushed at: 8 months ago - Stars: 2 - Forks: 0

insightsengineering/scda.2022 📦
An archive of synthetic CDISC data for 2022
Language: R - Size: 141 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 9 - Forks: 3

insightsengineering/r-spellcheck-action
Github Action that performs a spell check on an R package
Language: R - Size: 47.9 KB - Last synced at: 26 days ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 0

insightsengineering/teal.connectors.ssh
Teal connector to access data via ssh
Language: R - Size: 1.2 MB - Last synced at: 2 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 0

insightsengineering/staged-dependencies-action
Github Action to implement R development stages for package development
Language: R - Size: 103 KB - Last synced at: 26 days ago - Pushed at: 10 months ago - Stars: 3 - Forks: 2

insightsengineering/junit-xml-diff
Tool for comparing JUnit XML reports
Language: Go - Size: 47.9 KB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

insightsengineering/r-verdepcheck-action
Github Action to check if R package works correctly with minimum version of dependencies installed
Language: R - Size: 46.9 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1

insightsengineering/nestdevs-tasks
Size: 0 Bytes - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

insightsengineering/pattern-strip
Pattern Strip Extension For Quarto
Language: Lua - Size: 3.91 KB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

insightsengineering/nest-2023-summeR
Language: JavaScript - Size: 20.8 MB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

insightsengineering/covtracer-action
Github Action based on the Covtracer R package
Language: R - Size: 12.7 KB - Last synced at: 1 day ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

insightsengineering/julia-images
Insights Engineering Julia Images
Language: Shell - Size: 6.84 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

insightsengineering/framework-scientific-apps
AMIA 2021 - Case study in the development of a framework for quality and reproducibility in inner-sourced packages and self-service analytic dashboards
Language: TeX - Size: 749 KB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

insightsengineering/disk-space-reclaimer Fork of jlumbroso/free-disk-space
GitHub Action to free disk space on a Ubuntu runners 🗑️
Language: Shell - Size: 27.3 KB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 1

insightsengineering/bioc-check-action
Github Action that runs Bioconductor-specific R package checks with BiocCheck.
Language: R - Size: 21.5 KB - Last synced at: 17 days ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 2

insightsengineering/release-existence-action
Github Action that checks if a release for given tag exists
Size: 7.81 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

insightsengineering/cran-status-monitor
Github Action to check for issues reported on CRAN status page
Language: R - Size: 26.4 KB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

insightsengineering/uniCATE
Univariate conditional average treatment effect estimation for predictive biomarker discovery
Language: R - Size: 558 KB - Last synced at: 26 days ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 1

insightsengineering/testdepth
An R package that lets you specify a testing depth for your unit tests
Size: 5.86 KB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

insightsengineering/scda.2021 📦
An archive of synthetic CDISC data for 2021
Language: R - Size: 37.6 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 1

insightsengineering/depository
A depository for previously released R packages stemming from this organization.
Language: HTML - Size: 97.1 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 1

insightsengineering/codecollaboration 📦
Language: HTML - Size: 31.2 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 2

insightsengineering/posters
Miscellaneous posters and fliers
Size: 10.2 MB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

insightsengineering/NEST-roadmap
Size: 0 Bytes - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

insightsengineering/crmPack Fork of Roche/crmPack
Object-Oriented Implementation of CRM Designs
Language: R - Size: 61.1 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
